Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N18
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.5  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 186 YSDLDEEDQHLFRAAYDTPSYDHEEQE 266
           Y    +EDQH   A   T SYD+   E
Sbjct: 109 YPPFWDEDQHRLYAQIKTGSYDYPSPE 135


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 242 GSVVCSSEQMLIFFVQIRISRHVSW 168
           GSVVCS  Q ++F ++     +V+W
Sbjct: 163 GSVVCSLPQTIVFHLETH--PNVTW 185


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 105 YYSITMIAKLVIGILFLNAVSP 170
           YY++T I   ++GI+ +  + P
Sbjct: 141 YYTVTTILAAIVGIVMVLIIHP 162


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  DXGYLLKVIVIYNHHXYLKLLFNHNDR 127
           D G + + +V   +    +LLF+HNDR
Sbjct: 237 DLGQVYRRLVHAVNEIEKRLLFSHNDR 263


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 317 PKTAFQ--QVQLVEGYFVVLLFLVIVAGSVVC 228
           P+  F    V LV   F++L+FL +    +VC
Sbjct: 16  PENTFSLLSVLLVGFLFLILIFLSVAGNILVC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,853
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)