Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_N15
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 151 2e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 91 1e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 2e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 83 5e-17
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 0.66
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 2.0
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 6.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 8.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 151 bits (365), Expect = 2e-37
Identities = 63/90 (70%), Positives = 78/90 (86%)
Frame = +3
Query: 432 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYV 611
MREIVH+QAGQCGNQ+G+ FW I+DEHG+D+ G+Y G S+ Q +R+NVY+NEA+ GKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 612 PRAVLVDLEPGTMDAVRSGPYGMLFRPDTL 701
PRAVLVDLEPGTMDAV+SG +G LFRPD +
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNI 90
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +1
Query: 739 GHYTEGAELVDSVLDVIRKEAESCDCLXGSS*PXA-GRXPGSGMG 870
GHYTEGAEL D+VLDV+R+EAE+CD L G + G GSGMG
Sbjct: 104 GHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMG 148
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 91.5 bits (217), Expect = 1e-19
Identities = 37/89 (41%), Positives = 61/89 (68%)
Frame = +3
Query: 435 REIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVP 614
REI+ +QAGQCGNQIGS+FW+ + EHG+ G + + +DR +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 615 RAVLVDLEPGTMDAVRSGPYGMLFRPDTL 701
RA+L+DLEP ++ + S YG L+ P+ +
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENI 91
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 432 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDR--INVYYNEASSGK 605
MREI+ + GQ G QIG+ WE+ EHG+ G E+ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 606 YVPRAVLVDLEPGTMDAVRSGPYGMLFRPDTL 701
YVPR++ VDLEP +D VR+GPY LF P+ L
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQL 92
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 739 GHYTEGAELVDSVLDVIRKEAESCDCLXGSS*PXA-GRXPGSGMG 870
GHYT G ELVD V D IR+ A++C L G + G GSG G
Sbjct: 106 GHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFG 150
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 83.0 bits (196), Expect = 5e-17
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Frame = +3
Query: 432 MREIVHVQAGQCGNQIGSKFWEIISDEHGVDTTG-------VYKGESDLQLDRINVYYNE 590
MRE++ V GQ G QIG+ WE+ EHG+ G V+K S L D +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLN-DGFGTFFSE 59
Query: 591 ASSGKYVPRAVLVDLEPGTMDAVRSGPYGMLFRPDTL 701
GK+VPR++ VDLEP +D VR+GPY LF P+ +
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQM 96
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 739 GHYTEGAELVDSVLDVIRKEAESCDCLXGSS*PXA-GRXPGSGMG 870
GHYT G E++DSVL+ IR+ A++C L G + G GSG+G
Sbjct: 110 GHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLG 154
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 234 ILKVNYLLFSQLANYYFLNLTLKHLLSDRYILQNSY*AFSKSILKI 97
+L ++ L+ Y LNL LKH LS Y+ +Y +FS L I
Sbjct: 1155 LLSIHLLISRNHDPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHI 1200
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 108 ILKICICCDPKVHRVSYPTI*ILRIPYSGNR 16
+L C DPKV SY ++ IL PY G R
Sbjct: 517 VLDPCRAMDPKVVSTSYVSLQILNKPYVGFR 547
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 608 RPPCRSRGSGAGHYGRGQIRTLRDAVPPRY 697
R PC + S YGR I +D V RY
Sbjct: 696 RLPCLAISSSVTSYGRQMIEKTKDVVEKRY 725
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 250 TSVLRNYDSYRYIYYQWCITY 312
T VLRN S+R +Y W + +
Sbjct: 489 TEVLRNITSFRPLYRDWLVAF 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,149
Number of Sequences: 5004
Number of extensions: 71256
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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