Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N15
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 766 VDSVLDVIRKEAESCDCLXG 825
           +DS++++IR   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 623  SRGSGAGHYGRGQIRTLRDAV 685
            SR +G+GH G G + T  D V
Sbjct: 1924 SRQTGSGHGGHGGLLTPYDTV 1944


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 111 SILKICICCDPKVHRVSYPT 52
           S+L  C+ C P VH  + P+
Sbjct: 8   SLLITCLICSPSVHCGTRPS 27


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 254 VYYGITILIVTF 289
           +YYG++I +VTF
Sbjct: 277 LYYGVSICLVTF 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,403
Number of Sequences: 438
Number of extensions: 5481
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)