Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N14
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    28   1.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   1.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.7  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 556 VFNFVSFKTSLGTSLRLLFDKSKSYKFSGSVILCVNSLIPLLLKSIAVISL 404
           ++NF++F   L     L        K +GSVI  ++ ++P  L+ +AV SL
Sbjct: 223 LYNFMAFALLLNVLQSLRNALQAVQKNNGSVIKALSGILPYFLQWMAVFSL 273


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 KRQKKYDIKHLIISTTKFGFVFQEKLILRSLQMDKT 346
           KR + YD+  L +STTK  +  ++  I+R L +  T
Sbjct: 231 KRGRIYDVLSLEVSTTKLAYYVRKPNIVRDLDLVNT 266


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 519 VPSEVLKLTKLKTFNVSHNSITYFDDAPDFCNTIEQLNISNNAL 650
           +P E+  L  L+T ++S+N+IT      + C  +  +N++ N L
Sbjct: 587 LPQEIGLLKNLETIDLSYNAITNIASLSE-CPKLNSINVACNLL 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,941
Number of Sequences: 5004
Number of extensions: 52038
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)