Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N12
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   1.1  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    29   1.1  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   4.6  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    27   4.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   8.1  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   8.1  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   8.1  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 201 QSPSITTSEAIKSASPQPRYILAQSR---TVSRPITIDFLPGRRQPAVVI 341
           +  +I  S+   S + +P ++LA S+   ++SR + + FL G R+P + I
Sbjct: 199 EEAAIENSKISSSYAYKPSFVLASSQLDASISRILDVKFLYGYREPTLAI 248


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 398 LFNSAAISEITMDNYKEAYGYYPVTN 475
           L     +SE+T+D+ KEA  Y+PV +
Sbjct: 160 LIRHVGLSEVTVDDIKEAEQYFPVVS 185


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 308 SPRKTTTCGCNIPDNTNKWN*SLDSAFNDYLFNSAAISEITMDNYKEA 451
           S + T  C   + D   + +   DSA  D L+  ++I E T D Y +A
Sbjct: 337 SRKVTMLCSATMKDTVKRLS---DSALKDALYLKSSIVEETNDGYSQA 381


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 VPRSKCSGTTERLTLLWNFLRSGPK 205
           VP    +G+T+R+  LWN   S PK
Sbjct: 395 VPSFVATGSTDRVVKLWNTSDSSPK 419


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 443 KEAYGYYPVTNECDTYIEC 499
           KE +GYY   N C  + +C
Sbjct: 402 KEWFGYYSCNNPCTLFFDC 420


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 162  SGLHYYGTSYVRDQSPSITTSEAIKSASPQPRYI 263
            SG   + +SYV D +PS+ ++ ++ S S  P+ +
Sbjct: 1483 SGEGEFQSSYVPDYNPSLRSTPSVSSRSTLPQRV 1516


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 513 PSNKVVPTGYISNRARNGQIIRAHTLQTFNAHRGP 617
           P++  V TG      R   + R H+++ FN H  P
Sbjct: 473 PNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQP 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,374
Number of Sequences: 5004
Number of extensions: 72584
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)