Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_N12
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 32 0.69
01_06_1349 + 36493358-36493384,36493535-36493663,36493922-364940... 31 0.91
06_03_0809 + 24814590-24816593 30 2.8
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.9
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 29 4.9
01_05_0062 + 17755460-17755522,17756878-17756953,17757074-177571... 29 4.9
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564... 29 6.4
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 29 6.4
03_01_0170 + 1389759-1391159 29 6.4
10_02_0174 - 6202334-6204922 28 8.5
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 28 8.5
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 28 8.5
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 201 QSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRRQPAVVIS 344
Q P+++ SEA K S Q+ TVSRP++ +P +Q A V S
Sbjct: 771 QVPTVSKSEAQKQTSLVSSGTATQAITVSRPLSAPQVPAAKQTAPVAS 818
>01_06_1349 +
36493358-36493384,36493535-36493663,36493922-36494062,
36495005-36495144,36496292-36496412,36496418-36496924
Length = 354
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -3
Query: 337 TTAGCRLPGRK-----SIVIGLDTVRDCAKMY 257
T+ G RLPGRK I+ G+ TV+DC+ Y
Sbjct: 199 TSTGSRLPGRKRLLWSPIIFGVTTVKDCSVQY 230
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.9 bits (64), Expect = 2.8
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +3
Query: 114 LFLPLLYHAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKSASPQP----RYILAQSRT 281
L + LL + AA+QQ + G Y D S+ +ASP P Y+ +S
Sbjct: 9 LLVVLLAVPMTAAQQQYEANAQGDCYT-DNGSSVLGYTCGTAASPPPPPCTAYLTFRSAP 67
Query: 282 VS--RPITIDFLPGRRQPAVVISRTTPTN 362
S PIT+ +L PAV + + P +
Sbjct: 68 PSYASPITVSYLLNASVPAVAAANSVPVS 96
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 349 VRDITTAGCRLPGRKSIVIGLDT 281
+RDI TA C PG K +V+G T
Sbjct: 394 IRDIVTAVCYRPGGKGVVVGTIT 416
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 569 DYPCAYPSDVQCTSGSIKQYANPTAECPHEYGFYPLKESNCSNYIMCHEGK 721
D PCA ++C GSI NPT C G P S + + + H+ +
Sbjct: 202 DKPCAESIALECPEGSIPLLLNPT-PCLETTGDVPSTSSLQTEHAVDHQAR 251
>01_05_0062 +
17755460-17755522,17756878-17756953,17757074-17757145,
17757274-17757361,17757793-17758033,17759461-17759576,
17759804-17760021,17760210-17760241,17760338-17760440,
17760531-17760805
Length = 427
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 135 HAVNAAEQQSGLHYYGTSYVRDQSPSITTSEAIKS 239
H V + G++ Y YVRDQ P+ TT + S
Sbjct: 250 HMVKGSIDYVGINQYTAYYVRDQQPNATTLPSYSS 284
>11_06_0217 -
21353558-21353660,21354680-21355510,21356340-21356464,
21356546-21357076,21357207-21357650,21358469-21358612
Length = 725
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 494 ECKQGIAVKQSCPDGLHFKSSTQWPDYPCAYPSDVQCTSGSIKQYANPTAECP 652
E ++GI SC H + WP P + C S +KQY NP P
Sbjct: 11 EREKGIGCGYSCEASCHGRPRGIWPGPPLG----LGCGSRDMKQYYNPRCLIP 59
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 180 GTSYVRDQSPSITTSEAIKS--ASPQPRYILAQSRTVSRPITIDFLPGRRQPAVVISRTT 353
G Y P+ + S + KS A+P P ++ + T + P T +PG P + T
Sbjct: 254 GPDYTLTFCPASSPSGSQKSTTATPTPAAMMPGTGTPTTPTTATAMPGATMPGTATATTM 313
Query: 354 P 356
P
Sbjct: 314 P 314
>03_01_0170 + 1389759-1391159
Length = 466
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 180 GTSYVRDQSPSITTSEAIKSASPQPRYILAQSRTVSRPITIDFLPGRR 323
G + R +SP+ T A SA+PQP + A +R S + D RR
Sbjct: 51 GCASTRLRSPAPTLPSAASSAAPQPTPLHAAARVFSCRASYDLAVRRR 98
>10_02_0174 - 6202334-6204922
Length = 862
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 590 SDVQCTSGSIKQYANPTAECPHEYGFYPLKESNCSN 697
+DV K +AN ECP Y + PL SN N
Sbjct: 539 TDVNRKKKKNKVFANEGGECPQFYDWVPLTVSNNEN 574
>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 183 FHSNVSRSVVPLHLLRGTRVA 121
F S +R +V +HLLRGT +A
Sbjct: 1195 FRSTTTRKIVDVHLLRGTPIA 1215
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 141 VNAAEQQSGLHYYGTSYVRDQSPSIT 218
VN+A+ Q+ L YY + VRD+ S+T
Sbjct: 491 VNSADAQALLEYYDDNLVRDKEGSVT 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,034,344
Number of Sequences: 37544
Number of extensions: 465984
Number of successful extensions: 1137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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