Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N09
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    33   0.071
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   3.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   3.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   4.6  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.1  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   6.1  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    26   6.1  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   6.1  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 524 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIXQA 664
           ++  Q+ L  P +   IV  +   Q+ TV EVGPG G +T  ++ +A
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA 72


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 326 TIGAGVLG-VYLYSIFAIKQETFLERFRRAPENTAVIMAVAKTALQIRLPPLPSIKDVIK 502
           TIGAG +G V L       ++  L+     P NT+  + V + AL  RL   P+I  VI 
Sbjct: 58  TIGAGSMGKVKLVVNILTGEKAALKMIPFTPNNTSQTVRVQREALLGRLLRHPNICRVID 117

Query: 503 LYKLRALRELSQNFLMEPRLIDKIV 577
             +  A   +   ++   +L++ I+
Sbjct: 118 CIRTPACTYILFEYVPGGQLLEYIL 142


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 568 QNSACLR*YSESYRL*SWTRPGWNN 642
           +NSAC R Y E+ R  SW+R   NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 121 CKQDSLGSSKLFENIV*PQKIENLDIKS 38
           CK + +    LF NIV PQK + ++IK+
Sbjct: 17  CKPEKVNKQNLFTNIVKPQK-DKINIKT 43


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 205 STRSSAQAGRNSLYEINRREKSRTRSKITSD 297
           S R    A R++L + NR+ KS+ +  ITSD
Sbjct: 31  SRRKGKSALRSALEKKNRKSKSKPKVTITSD 61


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 121 CKQDSLGSSKLFENIV*PQKIENLDIKS 38
           CK + +    LF NI+ PQK + ++IK+
Sbjct: 17  CKPEKVNKQNLFTNIIKPQK-DKINIKT 43


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 121 CKQDSLGSSKLFENIV*PQKIENLDIKS 38
           CK + +    LF NI+ PQK + ++IK+
Sbjct: 37  CKPEKVNKQNLFTNIIKPQK-DKINIKT 63


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 121 CKQDSLGSSKLFENIV*PQKIENLDIKS 38
           CK + +    LF NI+ PQK + ++IK+
Sbjct: 17  CKPEKVNKQNLFTNIIKPQK-DKINIKT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,890
Number of Sequences: 5004
Number of extensions: 61037
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)