Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_N09
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0111 + 5381779-5382117,5382775-5382798 40 0.002
07_03_0548 + 19349943-19350290,19350372-19351100 36 0.043
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 34 0.17
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 31 1.2
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 30 2.1
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 29 6.5
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 28 8.5
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 28 8.5
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 536 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIXQAPXKLVL 682
Q+ L P L+D IV +G TV E+GPG G +T+ ++ QA K V+
Sbjct: 40 QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLL-QAGVKAVV 87
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 35.9 bits (79), Expect = 0.043
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 509 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 643
+ R + Q+ L PR++D IVR + V EVGPG G +T
Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLT 78
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 33.9 bits (74), Expect = 0.17
Identities = 11/40 (27%), Positives = 27/40 (67%)
Frame = +2
Query: 536 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSII 655
+N+++ ++ +++V A+G + V E+GPG G +T +++
Sbjct: 25 ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL 64
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 169 GRLRI*TENQRYSTRSSAQAGRNSLYEINRREKSRTRSKITSDFETQSTDGLHDRSRSVG 348
G L I +Q + ++Q G+N + EKS T ++ F + L D +RS+G
Sbjct: 455 GELNIHNADQIRNEDPTSQVGKNKTKR-GKAEKSVTLEELQKHF----SGSLKDAARSLG 509
Query: 349 C-LLVFYLRHQTGDVP*TISTSPRKYSS 429
V YL HQ DV I+T P K S
Sbjct: 510 AGYSVDYL-HQNPDVYAQINTQPLKVGS 536
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 413 PENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 589
PE A I+AVA + PS+K V++ L+ RE L + P+L+ ++ SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531
Query: 590 NIQNHT 607
+ +++T
Sbjct: 532 DSEDYT 537
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 320 GFTIGAGVLGVYLYSIFAIKQETFLERFRR 409
G ++GA +LGV L I + +T+++R RR
Sbjct: 102 GISVGASLLGVLLILIVCLTLQTWIKRSRR 131
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 320 GFTIGAGVLGVYLYSIFAIKQETFLERFRR 409
G ++GA +LGV L I + +T+++R RR
Sbjct: 483 GISVGASLLGVLLILIVCLTIQTWIKRSRR 512
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Frame = +1
Query: 163 GNGRLRI*TEN--QRYSTRSSAQAGRNSLYEINR--------REKSRTRSKITSDFETQS 312
G G RI EN Q+ STR AGR E R REKSR R + D + ++
Sbjct: 259 GLGSSRIGGENAEQKLSTRDQQHAGRPRSEEPRRDERRADRDREKSRERPR-ERDRDERT 317
Query: 313 TDGLHDRSR 339
+ HDR+R
Sbjct: 318 RERSHDRTR 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,483
Number of Sequences: 37544
Number of extensions: 366478
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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