Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N09
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    77   2e-14
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    29   3.3  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    28   7.6  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/75 (46%), Positives = 52/75 (69%)
 Frame = +2

Query: 464 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 643
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 644 RSIIXQAPXKLVLXE 688
           R+I+     +L + E
Sbjct: 66  RAILEAGASRLDVVE 80


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 39/59 (66%)
 Frame = +2

Query: 221 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLE 397
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFLE
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLE 113


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 536 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIXQA 664
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA 72


>Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 244 ISYFGLLEHWILLSTA-DFRFICGVSHYRK*TLEIITSNIN*CKQDSLGSSKLFENIV 74
           +S+FG+L+H I+++ +    + CG++ Y K      TSN   C Q  L  + + + I+
Sbjct: 201 LSFFGVLQHGIVITLSFGTLYYCGINTYLKIKKHTGTSNRTRCIQLQLFRALVAQTIL 258


>Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 244 ISYFGLLEHWILLSTA-DFRFICGVSHYRK*TLEIITSNIN*CKQDSLGSSKLFENIV 74
           +S+FG+L+H I+++ +    + CG++ Y K      TSN   C Q  L  + + + I+
Sbjct: 201 LSFFGVLQHGIVITLSFGTLYYCGINTYLKIKKHTGTSNRTRCIQLQLFRALVAQTIL 258


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 380 QETFLERFRRAPENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALREL 532
           ++TFL R        A+I A AK   +IR+PP P+I+  ++L+  + L EL
Sbjct: 551 KDTFLPRAEVYRFAAALIDASAKKQTKIRIPP-PAIRRPVELWTGKQLIEL 600


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 416 ENTAVIMAVAKTALQIRLPPL-PSIKDVIK 502
           EN AVI +  K   +I +PPL PS  DV+K
Sbjct: 360 ENKAVISSPKKEPEEIEVPPLPPSAPDVVK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,166
Number of Sequences: 27780
Number of extensions: 333307
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)