Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N06
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.96 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   5.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 769 PXXPPXXXPPCFPXLPXXPEXPXPPFXP 852
           P  P    PP  P +P  P  P PP  P
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAP 611



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 769 PXXPPXXXPPCFPXLPXXPEXPXPPFXP 852
           P  P    PP  P +P  P  P PP  P
Sbjct: 659 PEAPSVPQPPAAPVVPEVPSVPQPPAVP 686


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 551 GGGXPXPPPEXXGXGXXGGGXXXGXQKPNPXXXGGG 444
           GGG   PPP   G G  GG    G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect(2) = 1.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 748  KKXXGXPPXXPPXXXPPCFPXLPXXPEXPXP 840
            K   G PP  PP   PP        P  P P
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 22.2 bits (45), Expect(2) = 1.7
 Identities = 20/89 (22%), Positives = 20/89 (22%)
 Frame = +1

Query: 373  PQGXPFXXPXPGXGGGXFXXXKXPPPPXXXGFGFWXPXXFPPPXXPXPXXSGGGXGXPPP 552
            P G P   P P             PP          P   P    P P  S      P P
Sbjct: 1117 PSGAP-PVPKPSVAAPPVPVPSGAPPVPKPSVAA-PPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 553  XGGXXXXPXXRGXPRKXXXXQRXPXGPKP 639
              G    P               P  PKP
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 482 PXXSPPPXPXXPGXRXGGGXXPPPXGG 562
           P  +PPP P  PG        PPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 493 PPPXXPXPXXSGGGXGXPPP 552
           PPP  P P  +G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 436 KXPPPPXXXGFGFWXPXXFPPPXXPXPXXSGGGXGXPPPXG 558
           K PPPP         P   P P  P     GG    PPP G
Sbjct: 730 KSPPPPPPAVI-VPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 20/54 (37%), Positives = 20/54 (37%)
 Frame = +1

Query: 373 PQGXPFXXPXPGXGGGXFXXXKXPPPPXXXGFGFWXPXXFPPPXXPXPXXSGGG 534
           P   P   P P  GG        PPPP   G     P   PPP  P P  S GG
Sbjct: 746 PAPIPVPPPAPIMGG------PPPPPPP-PGVAGAGP---PPPPPPPPAVSAGG 789


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 854 KGXXGGNGXSGXXGRXGKQGGXXXGGXQGGXPXXFFXSPW 735
           +G  GG G  G  G  G   G   GG + G P     +P+
Sbjct: 453 RGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPF 492


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 851 GXXGGNGXSGXXGRXGKQGG-XXXGGXQGG 765
           G  GG G +   GR G +GG    GG +GG
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGG 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,338
Number of Sequences: 5004
Number of extensions: 23737
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)