Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N05
         (1149 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin pr...    33   0.74 
AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA...    33   0.74 
BT022850-1|AAY55266.1|  538|Drosophila melanogaster IP13040p pro...    29   9.1  
AE014297-116|AAF52115.2|  559|Drosophila melanogaster CG12586-PA...    29   9.1  
AE013599-1243|AAF58688.1|  610|Drosophila melanogaster CG13214-P...    29   9.1  

>X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin
            protein.
          Length = 147

 Score = 33.1 bits (72), Expect = 0.74
 Identities = 31/101 (30%), Positives = 32/101 (31%)
 Frame = -3

Query: 1141 GVGGGAXXXRGXGXXTXDXXFWXWGXPXXXXVTGGXXPXXPXXXXGRXXGXGXEGXGXXK 962
            G GGG    RG G       F   G        GG          G   G G  G G   
Sbjct: 23   GGGGGGFRGRGGGGGGGGGGF---GGGRGRG--GGGDRGGRGGFGGGRGGGGRGGGGGGG 77

Query: 961  RXAXXGXXPRGGXAXAXNSPQGGDSXPGAGRGTXXGDLXGG 839
            R A  G   RGG        +GG    G GRG   G   GG
Sbjct: 78   RGAFGG---RGGGGGRGGGGRGGGGRGGGGRGGGAGGFKGG 115


>AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA
            protein.
          Length = 344

 Score = 33.1 bits (72), Expect = 0.74
 Identities = 31/101 (30%), Positives = 32/101 (31%)
 Frame = -3

Query: 1141 GVGGGAXXXRGXGXXTXDXXFWXWGXPXXXXVTGGXXPXXPXXXXGRXXGXGXEGXGXXK 962
            G GGG    RG G       F   G        GG          G   G G  G G   
Sbjct: 16   GGGGGGFRGRGGGGGGGGGGF---GGGRGRG--GGGDRGGRGGFGGGRGGGGRGGGGGGG 70

Query: 961  RXAXXGXXPRGGXAXAXNSPQGGDSXPGAGRGTXXGDLXGG 839
            R A  G   RGG        +GG    G GRG   G   GG
Sbjct: 71   RGAFGG---RGGGGGRGGGGRGGGGRGGGGRGGGAGGFKGG 108


>BT022850-1|AAY55266.1|  538|Drosophila melanogaster IP13040p protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 31/105 (29%), Positives = 35/105 (33%), Gaps = 1/105 (0%)
 Frame = -2

Query: 1142 GGWGGRXXXXRXGVXDRXXXXLGX-GXPLXPXGXGGXXPXXXXXXXXPGXGXGXRGXGXX 966
            GG+GG+      G         G  G P  P G GG            G G G RG G  
Sbjct: 232  GGFGGQGGGGGYGGAGGGAGRGGSPGGPGSPGG-GGFGGQGGAGGGYGGGGGGGRGGGG- 289

Query: 965  EKXSXPXXXPPGGXGXGXE*SPGGG*PXXCREGDXXXXSXRGGGG 831
               +      PGG G G +   GG      R G        GGGG
Sbjct: 290  ---APGAPGSPGGGGFGGQGGGGGFGGGGGRGGAPGAPGSPGGGG 331


>AE014297-116|AAF52115.2|  559|Drosophila melanogaster CG12586-PA
            protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
 Frame = -2

Query: 1076 GXGXPLXPXGXGG----XXPXXXXXXXXPGXGXGXRGXGXXEKXSXPXXXPPGGXGXGXE 909
            G G P+ P G GG      P        PG   G  G G     + P   P G  G G  
Sbjct: 390  GPGGPMGPGGPGGPGGPGGPGGPGGPGGPGMPWGPGGPGGPGGPNGP-GGPGGPGGPGGP 448

Query: 908  *SPGG 894
              PGG
Sbjct: 449  GGPGG 453


>AE013599-1243|AAF58688.1|  610|Drosophila melanogaster CG13214-PA,
            isoform A protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 31/105 (29%), Positives = 35/105 (33%), Gaps = 1/105 (0%)
 Frame = -2

Query: 1142 GGWGGRXXXXRXGVXDRXXXXLGX-GXPLXPXGXGGXXPXXXXXXXXPGXGXGXRGXGXX 966
            GG+GG+      G         G  G P  P G GG            G G G RG G  
Sbjct: 304  GGFGGQGGGGGYGGAGGGAGRGGSPGGPGSPGG-GGFGGQGGAGGGYGGGGGGGRGGGG- 361

Query: 965  EKXSXPXXXPPGGXGXGXE*SPGGG*PXXCREGDXXXXSXRGGGG 831
               +      PGG G G +   GG      R G        GGGG
Sbjct: 362  ---APGAPGSPGGGGFGGQGGGGGFGGGGGRGGAPGAPGSPGGGG 403


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,420,963
Number of Sequences: 53049
Number of extensions: 427084
Number of successful extensions: 1481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 6046141584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)