Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    28   2.0  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   8.1  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   8.1  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 252 SQSRTAIGEHFHLFHYTFLFSCSLSSYAHERLLFFSKYYTQFWKDTELLSTF 97
           S ++  I +  H F  T +F C +SS + +      K + Q ++D  LL++F
Sbjct: 348 SCAQKGIDQFAHSFLRTPMFDCFISSESFQSFFILQKQF-QLFQDLALLTSF 398


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +1

Query: 274 RGKRS-GLYRLRQYCKVEL 327
           RGK + GLYRL ++ KVEL
Sbjct: 298 RGKENRGLYRLHEFTKVEL 316


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -3

Query: 351 ILRNSVPS*FHFAVLAQPVQSTSLPSLSVLTFPSQSRTAIGEHFHLFHYTFLFSCSLSSY 172
           +L+ S     H   + Q  +   L  +S   F SQ    I    +    + + + SLS+ 
Sbjct: 265 LLQKSPVRIIHGFEITQNYEQPLLAQISEFLFNSQISPKIKSKKN----SLITNYSLSTS 320

Query: 171 AHERLLFFSKYYTQFWKDTELL 106
           + ER+LF S Y+   +K  + L
Sbjct: 321 SKERMLFLSSYFENCFKGVKSL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,425
Number of Sequences: 5004
Number of extensions: 62797
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)