Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N03
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344...    32   0.53 
09_02_0389 - 8456957-8459917,8461941-8462267                           30   2.1  
09_02_0163 - 5133805-5134252,5134353-5134460,5135693-5136012           30   2.8  
07_01_0665 + 5001599-5003149                                           29   4.9  
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457...    28   8.6  

>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
            3444823-3444900,3444980-3445075,3445363-3445405,
            3445498-3445571,3445693-3445781,3445887-3445935,
            3446171-3446227,3446309-3446425,3448633-3448698,
            3449140-3449196,3449271-3449363,3449515-3449662,
            3449753-3449902,3449979-3450181,3450319-3450438,
            3450530-3450694,3450784-3450870,3450951-3451100,
            3451225-3451365,3451399-3451569,3452015-3452091,
            3452175-3452415,3452495-3452758,3452913-3453000,
            3453099-3453481
          Length = 1170

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 87   VLIKMSIIVQCLSRIVYNILRKTIAAREHMKIKNKRIKTYNEKDENVRRWLC 242
            + + MS++V+    I+ NI  +   A EH++     ++      +N R+W C
Sbjct: 1097 IFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTC 1148


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +3

Query: 165 REHMKIKNKRIKTYNEKDENVRRWLCDSETGMS---ELKAREEKWTVPVAPVLQSGIMMG 335
           R  M  + +R +   E+ +++R W   S        ++K   EK       +LQ+G  +G
Sbjct: 90  RASMAAQRRRPEQDQERKKSIRHWFSRSSANHEVDKKMKITTEKLNKKFHGILQNGRELG 149

Query: 336 LNCVKFDRNFKVDNILLANYVMPPFSVSPXSTDESLKA*N 455
           L  +K  R+ ++        + P +++      E LK  N
Sbjct: 150 LQPIKLQRHSRISE--FPGDLSPQYTLVGDIEQEKLKLIN 187


>09_02_0163 - 5133805-5134252,5134353-5134460,5135693-5136012
          Length = 291

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 233 MAVRL*DGNVRTESEGREVDCTGCASTAKWNYDGTELRKIRQK 361
           M V + DG V      +    TG   TA  +YDG E RK  QK
Sbjct: 92  MKVFIEDGTVTKNKRRKNAQHTGSVVTATPDYDGYEWRKYGQK 134


>07_01_0665 + 5001599-5003149
          Length = 516

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 153 TIAAREHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKAREEK 287
           T+   EH   + KR   Y E    + R  CD+  G+  L+A   K
Sbjct: 62  TVTVAEHDGGRMKRSDAYREVQAYLHRATCDASAGVRHLRAEPAK 106


>08_02_1614 -
           28243532-28244589,28245149-28245383,28245524-28245734,
           28245834-28245907,28246465-28246665
          Length = 592

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 164 SGYCFSQNIIHNSGKTLNYYR-HFDQYYFTRSE 69
           +G C   NIIH   K L  Y  ++DQY  TRSE
Sbjct: 270 NGVC--TNIIHMQSKKLKLYSGNYDQYVQTRSE 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,125,011
Number of Sequences: 37544
Number of extensions: 329107
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)