Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N03
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    31   1.4  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    31   1.4  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    31   1.4  
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 150  KTIAAREHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKAREEKW 290
            K +AA    + K  +++  NE+ +N+R  L ++ T +  L+ +EE+W
Sbjct: 1756 KMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIRSLRDKEEQW 1802



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 168  EHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKARE 281
            ++ KIK++     N+ D+ +++W  D+ T  SE KA E
Sbjct: 1213 QNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALE 1250


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 150  KTIAAREHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKAREEKW 290
            K +AA    + K  +++  NE+ +N+R  L ++ T +  L+ +EE+W
Sbjct: 1829 KMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIRSLRDKEEQW 1875



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 168  EHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKARE 281
            ++ KIK++     N+ D+ +++W  D+ T  SE KA E
Sbjct: 1286 QNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALE 1323


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +3

Query: 150  KTIAAREHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKAREEKW 290
            K +AA    + K  +++  NE+ +N+R  L ++ T +  L+ +EE+W
Sbjct: 1829 KMVAAELQARGKEAQLRHLNEQLKNLRTDLDNAHTDIRSLRDKEEQW 1875



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 168  EHMKIKNKRIKTYNEKDENVRRWLCDSETGMSELKARE 281
            ++ KIK++     N+ D+ +++W  D+ T  SE KA E
Sbjct: 1286 QNQKIKDEWDDFRNDADKEIQKWKTDAYTVRSEAKALE 1323


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 413 AKRWHHVICQQNIVNFKV 360
           A+ WHHV+C  N++ F+V
Sbjct: 91  AEYWHHVLCNMNMILFEV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,012
Number of Sequences: 27780
Number of extensions: 343936
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)