Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M24
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    51   2e-07
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   6.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +2

Query: 164 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVS 343
           R+A HAG WY ++   L++QL  ++       G  R +I+PH              +Q+ 
Sbjct: 6   REATHAGSWYLDDTELLTKQLKSFIKNPTPETGK-RFVISPHAGYMYSGKVASQGFQQLD 64

Query: 344 PVVVKRIFILGPSHHVRIAGCALS 415
              ++R+F+ GPSHH+    C +S
Sbjct: 65  FSKIQRVFVFGPSHHIFTRKCLVS 88



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = +3

Query: 435 TPLYDLTIDKQIYAELEAT-RQFDRMDEQTDENEHSIEMHLPYIA--KVMEEYKTSFTII 605
           TPL DL +D+ +  +L A+   FD M    DE+EHS+EM  P +A   + +       I+
Sbjct: 95  TPLGDLKVDEDLCQKLVASDNSFDSMTLDVDESEHSLEMQFPLLAFHLLKQGCLGKVKIV 154

Query: 606 PILVGSLT 629
           PI++G+LT
Sbjct: 155 PIMIGALT 162



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 661 LAPYLADPQNLLVISSDFCHWGSRFRYT 744
           L+ Y+ D  N  VISSDFCHWG RF YT
Sbjct: 173 LSQYIKDESNSFVISSDFCHWGRRFGYT 200


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 787 TRCSGKWG-PWSYPSTCT*ICCPSGRSRMRSPAGFEGRPDMAPVSLRTWIPFSGVREPTK 611
           +R  G WG   + P   T   C   +  +   A F+       + +R W     VR+P++
Sbjct: 31  SRARGDWGLKRTLPKIKTRYICVRQQDSLYKQADFQSSAKFVRL-VRNWFDAGFVRDPSE 89

Query: 610 IGIIVKLV 587
           + ++ +L+
Sbjct: 90  VALLQELL 97


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 540 WSAHFHRSARPFYRIDVWPP 481
           WS  +H   +P++R+  W P
Sbjct: 245 WSRDWHVCTKPYFRVIAWDP 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,713,468
Number of Sequences: 5004
Number of extensions: 81389
Number of successful extensions: 225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)