Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_M24
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 81 1e-15
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 79 3e-15
09_03_0187 - 13253787-13254509 29 6.5
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287 28 8.5
07_03_1666 + 28482262-28482385,28482475-28482992 28 8.5
05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308 28 8.5
02_05_0229 + 27027513-27027735,27027840-27027978,27028076-270282... 28 8.5
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 81.0 bits (191), Expect = 1e-15
Identities = 33/59 (55%), Positives = 45/59 (76%)
Frame = +1
Query: 634 RRESKYGAILAPYLADPQNLLVISSDFCHWGSRFRYTWKDSSRGPIYQSIEWLDKLGMD 810
+ E+ YG +L+ YL DP+N ISSDFCHWG+RF YT+ D S G I++SIE LD++GM+
Sbjct: 160 QNEAMYGQLLSKYLDDPKNFFSISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDRMGME 218
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 164 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQV 340
R+A HAG WYT N +L +LD WL A LT P RA+IAPH +
Sbjct: 5 RRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNI 64
Query: 341 SPVVVKRIFILGPSHHVRIAGCALS 415
P + R+F+LGPSHH CAL+
Sbjct: 65 DPTNISRVFLLGPSHHYYTPKCALT 89
Score = 73.7 bits (173), Expect = 2e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +3
Query: 429 YQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIP 608
Y TP+ DL +D ++ EL AT +FD MD DE EHS+EMHLPY++KV + + ++P
Sbjct: 94 YSTPIGDLPVDHEVIEELNATGKFDFMDLSVDEAEHSMEMHLPYLSKVFQGHNVK--VVP 151
Query: 609 ILVGSLTPE 635
ILVG+L +
Sbjct: 152 ILVGALNSQ 160
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 79.4 bits (187), Expect = 3e-15
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +1
Query: 634 RRESKYGAILAPYLADPQNLLVISSDFCHWGSRFRYTWKDSSRGPIYQSIEWLDKLGMD 810
+ E+ YG +L+ YL DP+N ISSDFCHWG+RF YT+ D S G I++SIE LD +GM+
Sbjct: 93 QNEAMYGQLLSRYLDDPKNFFSISSDFCHWGTRFSYTYYDKSHGAIHKSIEALDHMGME 151
Score = 52.4 bits (120), Expect = 5e-07
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 209 ELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSH 385
+L +LD WL A LT P A+IAPH + P + R+F+LGPSH
Sbjct: 5 KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLLGPSH 64
Query: 386 HVRIAGCALS 415
H CAL+
Sbjct: 65 HYYTPKCALT 74
>09_03_0187 - 13253787-13254509
Length = 240
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Frame = -1
Query: 730 CCPSGRSRMRSPAGFEGRP-----DMAPVSLRTW---IPFSGVREP 617
C P GRS + G +G P D+AP+ L W P+SG +P
Sbjct: 95 CSPHGRSTSTTRGGADGGPLTSRTDLAPLKLGPWDLEHPYSGWLDP 140
>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
Length = 540
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 549 HLPYIAKVMEEYKTSFTIIPILVGSLTPE 635
HLPYI +M+E ++P+LV ++ E
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMSRE 410
>07_03_1666 + 28482262-28482385,28482475-28482992
Length = 213
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 208 ATIFGVPTSSMVCLTTRHFLIKRTILIKLKQENNPKTLSQSQLRR 74
A+I GV S+ CLT + L K T+ +++ P +Q +RR
Sbjct: 25 ASIAGVVYCSLQCLTLPNLLPKATVRLQISSYEIPTAGNQGFIRR 69
>05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308
Length = 359
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 327 HIDKSVLWLSNEFSYWAHHTT*GSQD---ALFRPSNKYQTPLYDLTIDKQIYAELEA 488
H + +L N + ++A+ + S LF P+ + P +LT D +YA+++A
Sbjct: 166 HAEVGSPFLVNAYPFFAYKASPASVSLPYVLFEPNPGVRDPATNLTYDNMLYAQIDA 222
>02_05_0229 +
27027513-27027735,27027840-27027978,27028076-27028211,
27028343-27028510
Length = 221
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 652 GAILAPYLADPQNLLVISSDFCHWGSRFRYT 744
G +PYL + L++++SDF HW F T
Sbjct: 25 GLYSSPYLVS-ETLMLMTSDFAHWHGMFAGT 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,818,527
Number of Sequences: 37544
Number of extensions: 574235
Number of successful extensions: 1592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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