Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M23
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   4.6  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   6.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.1  

>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -2

Query: 445 PGCSFLCVRTNLSLNIRISE----LTSSFGSPDHDCVRRNRPEFGGDLPPPHVSAKS 287
           P  SFL    N++ N+ + +      S+F  PD+  ++  + EF G LP   V + S
Sbjct: 407 PAISFLETDNNVTTNVCVGKEWYRYPSTFFLPDNSRLKFVKSEFDGILPGEFVESNS 463


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 30  GILKIXSLGAVHSRQHDVADSSYFFAIETNYDSRKMDLGSDDSD 161
           GI+K+  L + +     V  SS  +++  +YD++ +  G  D+D
Sbjct: 551 GIIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNKILVSGGADTD 594


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 544 NGAITLMEQK-LMKSTIASEAKVKRCRPLSSRNAPGCSFLCVRTNLSLNIRISELT 380
           N + +LME+  ++ S+  S+    RC     ++ P   FL +++ +SL++  +ELT
Sbjct: 314 NSSSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELT 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,324
Number of Sequences: 5004
Number of extensions: 63409
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)