Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_M23
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 31 0.92
06_03_0073 + 16229369-16230115,16230182-16230431,16230618-162307... 30 2.1
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 3.7
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 29 3.7
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 4.9
05_01_0157 + 1056024-1056116,1056417-1056631,1057027-1057297,105... 29 4.9
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 29 4.9
02_02_0567 + 11569623-11569822,11570095-11570431 29 6.5
08_02_1052 - 23962374-23963369 28 8.5
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 31.5 bits (68), Expect = 0.92
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Frame = +3
Query: 339 LRRTQSWSGDPNDDVSSEIRILRERL-VRTQRKLHPGAFRL------LSGRQRLTL-ASL 494
L + + G PN+D ++ ++ E + T + + P A RL L GR + A+
Sbjct: 39 LAQASPFCGKPNEDANAHLQQFLEICSMYTIKGVSPDAVRLRLFPFSLLGRAKQWFYANR 98
Query: 495 AIVDFMSFCSMSVMAPFFPREASSKGLSDTTCGMVFSF 608
A ++ CS + ++ FFP G ++T CG + SF
Sbjct: 99 AAINTWDKCSTAFLSKFFP-----MGKTNTLCGRISSF 131
>06_03_0073 +
16229369-16230115,16230182-16230431,16230618-16230728,
16230768-16231153
Length = 497
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Frame = +3
Query: 339 LRRTQSWSGDPNDDVSSEIRILRERL-VRTQRKLHPGAFRL------LSGRQRLTL-ASL 494
+ + + G PN+D ++ ++ E + T + + P A RL L GR + A+
Sbjct: 86 MAQASPFCGKPNEDANAHLQQFLETCSMYTIKGVSPDAVRLRLFLFSLLGRAKQWFYANR 145
Query: 495 AIVDFMSFCSMSVMAPFFPREASSKGLSDTTCGMVFSF 608
A ++ CSM+ ++ FFP G ++ G +FSF
Sbjct: 146 AAINTWDKCSMAFLSKFFP-----MGKTNALRGRIFSF 178
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = +2
Query: 407 RKIGAHTKKATSRRIPAAERPTAFNLGFTRDCRFH-------ELLFHERYGSILP 550
R IG + RR+ E P FN RDCR + +L+ ++ +G LP
Sbjct: 69 RLIGGGLDRCAGRRVYMYELPPRFNAELVRDCRLYSRSMDVCKLVVNDGFGPALP 123
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +3
Query: 363 GDPNDDVSSEIRILRERL-VRTQRKLHPGAFRL------LSGRQRLTL-ASLAIVDFMSF 518
G PN+D ++ ++ E T + ++P A RL L GR + A+ A V+
Sbjct: 47 GKPNEDANAHLQQFLEICSTYTIKGVNPNAVRLRLFPFSLLGRAKQWFYANRAAVNTWDK 106
Query: 519 CSMSVMAPFFPREASSKGLSDTTCGMVFSF 608
CS + ++ FFP G ++ CG + SF
Sbjct: 107 CSTAFLSKFFP-----MGKTNALCGRISSF 131
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +3
Query: 267 KTSTHAGDLAETWGGGRSPPNSGR----LRRTQSWSGDPNDDVSSEIRILRERL 416
+TS L+ + GG SPP SGR R QS S P+ SS I R+RL
Sbjct: 273 RTSLPDHPLSHSRGGSPSPPISGRDMGSRGRRQSLSPTPSRRASSSHSIERDRL 326
>05_01_0157 +
1056024-1056116,1056417-1056631,1057027-1057297,
1058040-1058365,1058677-1058769,1060182-1060244,
1062788-1062928,1063438-1063620,1064215-1064413,
1064498-1064702,1065817-1065944
Length = 638
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +3
Query: 255 SRINKTSTHAGDLAE-TWGGGRSPPNSGRLRRT------QSWSGDPNDDVSSEIRILRER 413
SR S AGD AE +W SPPN R RR + P +VSS IRILR
Sbjct: 200 SRTPLHSMDAGDDAEPSWRRSPSPPNP-RARRPMLDQEIRRPHRFPRTEVSSMIRILRR- 257
Query: 414 LVRTQRKLHP 443
R +LHP
Sbjct: 258 --REAEELHP 265
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 268 KHQRMLEIWRRHGAEEGPHQTRGDCDEHNHGRETRTMMSARKS 396
+HQR+L +RHG + P Q H G+ +++AR+S
Sbjct: 541 RHQRLLVRQQRHGGADAPDQEPAQIPVH-AGQPLARLLAARRS 582
>02_02_0567 + 11569623-11569822,11570095-11570431
Length = 178
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 279 HAGDLAETWG--GGRSPPNSGRLRRTQSWSGDPNDDVSSEIRILRERLVR 422
H GD WG GG + +S + R WS DV +L +LVR
Sbjct: 38 HDGDGVAAWGWCGGGAAKDSPAVERPPRWSSGHRHDVVQSRVLLWPKLVR 87
>08_02_1052 - 23962374-23963369
Length = 331
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 423 TQRKLHPGAFRLLSGRQRLTLASLAIVDFMSFCSMSVMA 539
T + HPGA RL GRQ L ASL++ +S S++ +A
Sbjct: 106 TTARYHPGAARLTLGRQVLD-ASLSLGRRLSETSLAALA 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,451,337
Number of Sequences: 37544
Number of extensions: 451709
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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