Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M22
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.64 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    29   0.64 
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   2.0  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   3.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   4.5  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    26   6.0  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 360 TKCIEWRPNDLITIDSDTQDQ 422
           +KC++W P D IT+DS  Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = -3

Query: 154 RSNNIEFYAIISWYLNKQSKTNLISRQSQKLKKNQILRK 38
           R  NI   ++  W+ N+++K+ LISR+ Q+ ++ +ILR+
Sbjct: 201 RELNIPERSVTIWFQNRRAKSKLISRR-QEEERQRILRE 238


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 304 GRPTLVFRSTPSCVNKSLYWS 242
           G  TLVF STP+  + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 346 CTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMT 197
           C+ Q+IPI    ET     ++ S   C +++++   N  P+L+  +   T
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQST 194


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 636  RISRXSMLEIERIXPDSRFVENCIVGV 556
            R+SR  M +   I P+++F  N +VGV
Sbjct: 1079 RVSRIDMFDDYDILPETKFTRNNLVGV 1105


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 359
           L +Q KD+ +QDGV    +V R     N +  +C +   DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,905
Number of Sequences: 5004
Number of extensions: 53476
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)