Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M22
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   4.7  
02_02_0310 - 8842286-8843314                                           24   5.7  
01_05_0200 - 19196606-19197304                                         25   7.7  
11_04_0375 + 16933688-16933703,16936291-16937063                       28   8.3  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    28   8.3  
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820     23   8.8  

>09_02_0077 +
           3964729-3964734,3965194-3965289,3965744-3973579,
           3973665-3973982,3974565-3974763,3974937-3975202,
           3975288-3975574,3976714-3977818,3977900-3978046,
           3978146-3978226,3978315-3978540,3978622-3978761,
           3979539-3979645,3979739-3979841
          Length = 3638

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 298 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSPAKI 176
           P+L+ ++  S +N S  WS   + EL+ ++ M+   +P  +
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVSSTPGSL 316


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 24.2 bits (50), Expect(2) = 5.7
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +2

Query: 197 RHHHHHVYE--FGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNR--DALHCTERRRN* 364
           RHHHHH  +    R    P++R  H      + + R+       ++  D     E  R  
Sbjct: 226 RHHHHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDERELEEMARRW 285

Query: 365 MHR-MATKRLDHHR 403
           + + + + R+ HHR
Sbjct: 286 IRKALMSSRMHHHR 299



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 194 YRHHHHH 214
           +RHHHHH
Sbjct: 191 HRHHHHH 197


>01_05_0200 - 19196606-19197304
          Length = 232

 Score = 24.6 bits (51), Expect(2) = 7.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 191 LYRHHHHH 214
           LY HHHHH
Sbjct: 219 LYHHHHHH 226



 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 200 HHHHHVYE 223
           HHHHH Y+
Sbjct: 221 HHHHHHYK 228


>11_04_0375 + 16933688-16933703,16936291-16937063
          Length = 262

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 321 SIGMLCIVQNADGTKCIEWRPNDLITI 401
           ++G L  +Q  DG+  IEWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYIEWRNNVLINL 32


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 194 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 310
           +  HHHHV+ +   +T+  Q+     RG+S  QC S+ +
Sbjct: 634 FMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671


>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
          Length = 357

 Score = 22.6 bits (46), Expect(3) = 8.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 194 YRHHHHHVYE 223
           + HHHHH +E
Sbjct: 298 WHHHHHHHHE 307



 Score = 21.4 bits (43), Expect(3) = 8.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 179 FSG*LYRHHHHH 214
           FS   + HHHHH
Sbjct: 295 FSPWHHHHHHHH 306



 Score = 20.6 bits (41), Expect(3) = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 203 HHHHVYEFGR*ITRPVQRL 259
           HHHH +     +  P QRL
Sbjct: 299 HHHHHHHHEPTLPTPPQRL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,702
Number of Sequences: 37544
Number of extensions: 350479
Number of successful extensions: 984
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)