Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M21
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0400 - 22608519-22608844,22609044-22609122                       29   4.0  
03_05_0067 - 20460206-20460703,20461255-20461530                       29   5.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.3  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    29   7.1  
07_03_0890 - 22332768-22333382                                         29   7.1  
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    28   9.3  
04_01_0197 + 2323790-2324098,2324145-2324774                           28   9.3  

>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = -3

Query: 867 GGGGAXXKXPXXXXXXGXGAXXGXXXKKXFXGGXPXXGGXXXXPPXGGXKXPPPP 703
           GGGG            G G   G        GG    GG    PP  G   PP P
Sbjct: 52  GGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPPGP 106


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 766 PPXWGXKXXPPPXGXEXXPPPXP 698
           PP W     PPP   +  PPP P
Sbjct: 7   PPQWAMGPPPPPQYFQAGPPPPP 29


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 377 GGPXPPPXXGXPPPP 333
           G P PPP  G PPPP
Sbjct: 343 GPPPPPPAKGPPPPP 357



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 766 PPXWGXKXXPPPXGXEXXPPPXP 698
           PP  G    PPP G    PPP P
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPP 370



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 725 PPXGGXXFXPPXXGXPPXKXFFXXXPXXAPXPXXXXXXGXXXXAPPPP 868
           PP  G    PP  G PP        P   P P      G     PPPP
Sbjct: 339 PPPKGPPPPPPAKGPPP------PPPPKGPSPPPPPPPGGKKGGPPPP 380



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 370 PXPPPXGXTPPPP 332
           P PPP G +PPPP
Sbjct: 355 PPPPPKGPSPPPP 367


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 334 GGGGXPXXGGGXGPPXXXKXXXXXGPPP 417
           GGGG P  GGG   P         G PP
Sbjct: 73  GGGGGPVSGGGGSAPGGAATAPRQGAPP 100


>07_03_0890 - 22332768-22333382
          Length = 204

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 376 GXPXPPPXGXTPPPP 332
           G P PPP   TPPPP
Sbjct: 73  GSPPPPPAEATPPPP 87


>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -1

Query: 419 GGGGPXXXKXFXNXGGPXPPPXXGXPPPP 333
           G G         + G P PPP    PPPP
Sbjct: 322 GDGNQPEGSNHNHQGNPPPPPPPPPPPPP 350


>04_01_0197 + 2323790-2324098,2324145-2324774
          Length = 312

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -1

Query: 419 GGGGPXXXKXFXNXGGPXPPPXXGXPPPP 333
           G G         + G P PPP    PPPP
Sbjct: 11  GDGNQPEGSNHNHQGNPPPPPPPPPPPPP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,959,030
Number of Sequences: 37544
Number of extensions: 628445
Number of successful extensions: 5154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3697
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)