Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_M15
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 68 2e-12
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 46 6e-06
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 42 1e-04
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 39 9e-04
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 33 0.043
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 2.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 27 3.7
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 67.7 bits (158), Expect = 2e-12
Identities = 54/206 (26%), Positives = 81/206 (39%), Gaps = 4/206 (1%)
Frame = +2
Query: 125 KVDVKYTKLFINNEWVDAVSKKTFPTINPQDETVITQVAEGDKADIDLAVAAAKKAFHRY 304
K ++ LFINN+ VD+V +P E +I +VA+ D+ D+D+AV A+ AF
Sbjct: 17 KTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTD 76
Query: 305 SPWRTMDASQRGXXXXXXXXXXXXXXXXXXXXXXXDCGKPVKXSEEEXTFPQACSDITLE 484
+PWR ++QRG D GK + + + QA +D
Sbjct: 77 APWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV---QAAAD-CFR 132
Query: 485 KRPRYXEXPFLXT-EXSLRS---P*XXXXGVCXQIXPXNSPYX*CLGKYPXPXLXDLPLX 652
+ + + T E ++ GVC QI P N P+ C K +
Sbjct: 133 YYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTII 192
Query: 653 LXPAXQXP*RPPLVAALXKXTGFPPG 730
L A P + GFPPG
Sbjct: 193 LKTAELTPLSALCLTKFVPECGFPPG 218
Score = 43.2 bits (97), Expect = 5e-05
Identities = 27/91 (29%), Positives = 38/91 (41%)
Frame = +1
Query: 454 SASVLXYYAGKAAKIXGXTIPSXGEXLTFTMXXPXRSVRSDXPXEFPLPXMSWKIPPPLX 633
+A YY G A K G TI + + +T P P FP +WKI P +
Sbjct: 127 AADCFRYYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVA 186
Query: 634 XGFTVXLEXS*XXPLTAPVGXRPXQXNGFSP 726
G T+ L+ + PL+A + GF P
Sbjct: 187 CGNTIILKTAELTPLSALCLTKFVPECGFPP 217
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 46.4 bits (105), Expect = 6e-06
Identities = 30/97 (30%), Positives = 42/97 (43%)
Frame = +1
Query: 460 SVLXYYAGKAAKIXGXTIPSXGEXLTFTMXXPXRSVRSDXPXEFPLPXMSWKIPPPLXXG 639
++L Y AG A KI G IP+ E L + P P +PL WKI P L G
Sbjct: 123 ALLRYCAGWADKIYGQVIPTGPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAG 182
Query: 640 FTVXLEXS*XXPLTAPVGXRPXQXNGFSPRGXVXXXS 750
+ ++ + PL+ + GF P+G V S
Sbjct: 183 NCIIIKSAETTPLSLLYFATLVEEAGF-PKGVVNIIS 218
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 131 DVKYTKLFINNEWVDAVSKKTFPTINPQDETVITQVAEGDKADIDLAVAAAKKAFHRYSP 310
D + + F+ +W+ + + KTF NP +I +VA+ + A++AA +AF Y
Sbjct: 14 DKSHAQSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKN 73
Query: 311 WRTMDASQ 334
+ + SQ
Sbjct: 74 FTHVQRSQ 81
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 39.1 bits (87), Expect = 9e-04
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Frame = +2
Query: 149 LFINNEWVDAV--SKKTFPTINPQDETVITQVAEGDKADIDLAVAAAKKAFHRYSPWRTM 322
LFI+ ++V + + K P INP E +I A D+D AV A F R W
Sbjct: 23 LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTF-RSGIWAKW 81
Query: 323 DASQRGXXXXXXXXXXXXXXXXXXXXXXXDCGKP 424
QRG +CGKP
Sbjct: 82 PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKP 115
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +1
Query: 457 ASVLXYYAGKAAKIXGXTI----PSXGEXLTFTMXXPXRSVRSDXPXEFPLPXMSWKIPP 624
A + YYA + A+ T+ P+ F P + P FPL WK+ P
Sbjct: 127 ADMFEYYA-EVAETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVP 185
Query: 625 PLXXGFTVXLEXS*XXP 675
+ G V L+ S P
Sbjct: 186 AIASGNCVVLKPSELAP 202
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 33.5 bits (73), Expect = 0.043
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 451 FSASVLXYYAGKAAKIXGXT-IPSXGEXLTFTMXXPXRSVRSDXPXEFPLPXMSWKIPPP 627
++A + ++AG+A +I G + + S + T+ P V P FP ++ K+
Sbjct: 124 YAAKFIDWFAGEALRISGDSSMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAA 183
Query: 628 LXXGFTVXLEXS*XXPLTA 684
L G TV + + P TA
Sbjct: 184 LAAGCTVVIRPAAETPFTA 202
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 152 FINNEWVDAVSKKTFPTINPQDETVITQVAEGDKADIDLAVAAAKKAFHRYSPWRTMDAS 331
+I +WV A S KTF NP + V + + A+ A +AF Y R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSY---RNSDIK 83
Query: 332 QR 337
+R
Sbjct: 84 ER 85
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 152 FINNEWVDAVSKKTFPTINPQDETVITQVAEGDKAD 259
F+ D S+ TF TI PQ+ + E K+D
Sbjct: 224 FLQQSEADQPSEDTFTTIGPQNSLTVNSTIEKHKSD 259
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 289 SIPPLFPMAYHGRFSTR-PPIA*ASRTSRIPIXIP 390
S PP P A GR + PP+ ASRTS P+ P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 279 AATAKSISALSPSATCVMTVSSCGLMVGKVFLLTASTHSLLINSLVYLTST 127
+ +A +SA S + TC +S+ G LTA ++++ NS ST
Sbjct: 442 SGSATLVSASSATGTCASYLSAAGSSATNAISLTADSNAVSRNSSASTMST 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,350
Number of Sequences: 5004
Number of extensions: 48104
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -