Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M14
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    31   1.1  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    30   1.9  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    28   7.7  

>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 262 KKWSEXIRYNIFIMKLVEFGISLIITI 342
           +KW+  I Y IF  +L+ FG+  I+T+
Sbjct: 134 RKWTRRIYYTIFYTQLINFGLPEILTV 160


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 140 RQLKHKNIIEYHYVCKFKLISLRLAAWKKFSNNNKXLYQSTKSGVN 277
           RQL HK + E HY     +  L+ AA++ F+   K  Y    SGV+
Sbjct: 322 RQLTHKEVSEQHYQ---SVTRLQKAAFRLFNETMKEFYVLNVSGVD 364


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 250 VPVDKKWSEXIRYNIFIMKLVEFGISLIITIL---PLAIPKPQGHMYCISSGPTLVISFL 420
           + V  +W   +  + F++    FG +  +  L    L++P P  H  C+ +  ++  SFL
Sbjct: 106 IDVKWRWMLMLFASAFVLSWSIFGTTYYLIALVHGDLSLPTPVNHTACVMNLDSVYSSFL 165

Query: 421 FII 429
           F +
Sbjct: 166 FAV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,269
Number of Sequences: 27780
Number of extensions: 233142
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)