Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M14
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 261 VDWYXILLLLENFFQAASLNEISLNLQT*WYSIIFLCFSCLHSWVRRRSPDSY 103
           +D Y  +    ++ Q  S     L + T W     +CF  L  W  +RS  +Y
Sbjct: 161 LDRYLAVTRPVSYPQIMSPRRARLLVATVWILSFVICFPPLVGWKDKRSHPAY 213


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 362 FGMASGNIVMIRDIPNSTSFMINILYRIXSLHFLST 255
           F + SG  +  + + +S    + I YR+  L FLST
Sbjct: 4   FQLGSGTPMGAKYLMDSDVIFVTINYRLGILGFLST 39


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 PTLVISFLFIILYFRRRVPLXM-EKMYLXFHILLT 498
           PT++ISFL +++++   +P    EK+ L   ILL+
Sbjct: 243 PTVLISFLCVLVFY---LPAEAGEKVTLGISILLS 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,594
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)