Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M09
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    26   1.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    26   1.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    26   1.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.6  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 26.2 bits (55), Expect(2) = 1.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 402 PPPPPXXFFXSXPPXPRXXXF 464
           PPPPP  F    PP P    F
Sbjct: 773 PPPPPGGFKGGPPPPPPPGMF 793



 Score = 22.6 bits (46), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 393 GGXPPPPP 416
           GG PPPPP
Sbjct: 740 GGPPPPPP 747


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 26.2 bits (55), Expect(2) = 1.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 402 PPPPPXXFFXSXPPXPRXXXF 464
           PPPPP  F    PP P    F
Sbjct: 773 PPPPPGGFKGGPPPPPPPGMF 793



 Score = 22.6 bits (46), Expect(2) = 1.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 393 GGXPPPPP 416
           GG PPPPP
Sbjct: 740 GGPPPPPP 747


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 26.2 bits (55), Expect(2) = 1.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 402 PPPPPXXFFXSXPPXPRXXXF 464
           PPPPP  F    PP P    F
Sbjct: 356 PPPPPGGFKGGPPPPPPPGMF 376



 Score = 22.6 bits (46), Expect(2) = 1.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 393 GGXPPPPP 416
           GG PPPPP
Sbjct: 323 GGPPPPPP 330


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/79 (24%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
 Frame = +2

Query: 527 PPXAXGXPXXXGXXXXPTPPXXNXAPSXKQXXMEGGGXXPAXGXPTXXXXXXXXXXXPTX 706
           PP     P        P PP     P+      + GG  P  G  +           P  
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPER 342

Query: 707 GSXXGVPXT--PQIXXPPR 757
               G P T  P    PPR
Sbjct: 343 SPPTGSPPTGSPPTGRPPR 361


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/79 (24%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
 Frame = +2

Query: 527 PPXAXGXPXXXGXXXXPTPPXXNXAPSXKQXXMEGGGXXPAXGXPTXXXXXXXXXXXPTX 706
           PP     P        P PP     P+      + GG  P  G  +           P  
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPER 363

Query: 707 GSXXGVPXT--PQIXXPPR 757
               G P T  P    PPR
Sbjct: 364 SPPTGSPPTGSPPTGRPPR 382


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/79 (24%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
 Frame = +2

Query: 527 PPXAXGXPXXXGXXXXPTPPXXNXAPSXKQXXMEGGGXXPAXGXPTXXXXXXXXXXXPTX 706
           PP     P        P PP     P+      + GG  P  G  +           P  
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPER 348

Query: 707 GSXXGVPXT--PQIXXPPR 757
               G P T  P    PPR
Sbjct: 349 SPPTGSPPTGSPPTGRPPR 367


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 312 PXXXGXPLXGGXXXF*XXXKYXXXXXRGGXPPPPPXXFFXSXPPXPR 452
           P   G P  GG                G  PPPPP  ++   PP P+
Sbjct: 66  PGPHGMPFMGGPPPH-HQYHLQYPPPHGLGPPPPPPHYYTQPPPPPQ 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,949
Number of Sequences: 27780
Number of extensions: 167962
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)