Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M08
         (954 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071142-1|AAL48764.1|  572|Drosophila melanogaster RE17942p pro...    34   0.33 
AF223064-1|AAF34687.1|  571|Drosophila melanogaster putative mic...    34   0.33 
AE014297-195|AAF52059.2|  572|Drosophila melanogaster CG10229-PA...    34   0.33 

>AY071142-1|AAL48764.1|  572|Drosophila melanogaster RE17942p
           protein.
          Length = 572

 Score = 33.9 bits (74), Expect = 0.33
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 216 GRKAAANTRATLPTTESSQPGTEAPYH*L*RRPASQHDAFPQTS 85
           GR+AA N R T P T++S+P +  P       PAS  ++   TS
Sbjct: 161 GRRAAPNNRRTTPATQNSRPSSTIPQSTARNGPASTRNSRNSTS 204


>AF223064-1|AAF34687.1|  571|Drosophila melanogaster putative
           microtubule severingprotein katanin p60 subunit protein.
          Length = 571

 Score = 33.9 bits (74), Expect = 0.33
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 216 GRKAAANTRATLPTTESSQPGTEAPYH*L*RRPASQHDAFPQTS 85
           GR+AA N R T P T++S+P +  P       PAS  ++   TS
Sbjct: 161 GRRAAPNNRRTTPATQNSRPSSTIPQSTARNGPASTRNSRNSTS 204


>AE014297-195|AAF52059.2|  572|Drosophila melanogaster CG10229-PA
           protein.
          Length = 572

 Score = 33.9 bits (74), Expect = 0.33
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 216 GRKAAANTRATLPTTESSQPGTEAPYH*L*RRPASQHDAFPQTS 85
           GR+AA N R T P T++S+P +  P       PAS  ++   TS
Sbjct: 161 GRRAAPNNRRTTPATQNSRPSSTIPQSTARNGPASTRNSRNSTS 204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,784,296
Number of Sequences: 53049
Number of extensions: 530395
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4751175096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)