Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M07
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   4.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.2  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    26   6.2  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   8.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   8.2  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   8.2  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 133 EGILAPVFTPMYEDGEVNYSVIANYLSFLKQKNINGILVGGTTGEAASLSL-QER 294
           +GI +     ++E+   N  ++  +L+   Q N   I+VG  TG A   +L QER
Sbjct: 380 QGICSRWICDLHENTSFNIDILPGFLNLSYQSNKPLIMVGPGTGVAPLRALIQER 434


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 624 FHSHEVWNPR*SQCKEPFHVQVH 556
           FHS    +P  +QC  PFHV+ H
Sbjct: 67  FHSSNEKDPN-AQCCAPFHVEAH 88


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 531 LPLSYDERRGLEHEKVLCTGFIEDSKLHGNESGFKRCCTSR*FACAPIRKYS 686
           LP+    +R +EH  +L  G I+        SGF  CCT + F     R Y+
Sbjct: 209 LPIYNWAKRMIEHYNLLEEGMIKHLTASA-VSGFGVCCTMQIFDTVMTRMYN 259


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 169 EDGEVNYSVIANYLSFLKQKNINGILVGGTTGEAASLSLQERKDVLNTWLQSARRHKIK 345
           ED +    VI N    LKQ     + +  T      ++LQE K+  N  +Q A R  +K
Sbjct: 68  EDADAKEYVI-NSFEHLKQSRPTAVNLFETAKFMQGIALQEGKNCRNKIIQEAERMLVK 125


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 436 LPELYYKPRNVEQLVSYLETVSKAAPTLPLIYYHFPMMSGVDLNMKRF 579
           LP  Y+ P  +      L   S    +LP IY H  ++ GVDL+   F
Sbjct: 620 LPPKYFTPDLMTSRADQLVLKSFVKESLPEIYSHLELL-GVDLDAISF 666


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 367 IPLPDVIEMAQFAEDVEVDAIMTLPELYYKPRNVEQLVSYL-ETVSKAAPTLPLIYY 534
           IP+ D +  +Q A +  V+    +P  Y KP + E L S + E  +  A     I+Y
Sbjct: 58  IPIDDTVGASQKALNTFVEHYKYVPGTYDKPESFEMLNSIIAEKETAPASECTRIFY 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,141
Number of Sequences: 5004
Number of extensions: 59134
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)