Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M06
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    29   1.2  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   8.4  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 35  PLRF*CTTDASITSDAQLVVLPIVPRYRQHGSCSNAPDPL 154
           PLR   TT  S+ S A L  L +   +  H S SN+PDPL
Sbjct: 184 PLRI-PTTGVSLDS-ADLTPLSVSTSHLNHPSTSNSPDPL 221


>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 881 WGXLXGPKTKSIIEYDIS 828
           WG L GPK K II Y +S
Sbjct: 14  WGHLGGPKQKGIITYSLS 31


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 178 AARITTECKWIRSIRTRSVLSVPRHYREHNQLGVAGY 68
           A +I  EC W+  +   S+L   +    + QL VA Y
Sbjct: 731 AKKIDHECAWVYYLNGLSLLQQGKEVEGYEQLDVAHY 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,792
Number of Sequences: 5004
Number of extensions: 51321
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)