Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M05
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect(2) = 1.9
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +1

Query: 568 PRKNFFNKXPQKXPKXLKNXPXSGVFSXKGPPPPXXAPXKKXPPPIXXG 714
           P  N  +K P   P    +         + PPPP  +   +  PPI  G
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNG 330



 Score = 21.0 bits (42), Expect(2) = 1.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 403 PXIXPXPPGKRGFVXXPPXXFPPQ 474
           P   P PP   G V  PP   PP+
Sbjct: 251 PAPPPIPPPSNGTVSSPPNS-PPR 273


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/57 (26%), Positives = 17/57 (29%)
 Frame = +1

Query: 562 ETPRKNFFNKXPQKXPKXLKNXPXSGVFSXKGPPPPXXAPXKKXPPPIXXGGGXXPP 732
           E  +K      P   P  +   P         P P    P    PPP   G G  PP
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 858 GKKRGXXIXXEXGGGXGXKRGGXXEGGFXGGEK 760
           G  RG       GG  G  RGG   GGF GG +
Sbjct: 156 GNSRGGFGGGSRGGFGGGSRGGS-RGGFRGGSR 187


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 658  PPPPXXAPXKKXPPPIXXGGGXXPP 732
            PPPP   P     PP+  G    PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,947
Number of Sequences: 5004
Number of extensions: 17707
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)