Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M03
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    29   5.7  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    28   7.5  

>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 301 LMCLTLISFREAILQHYFPKFC 236
           +MCLT  SFR+AIL  +F  FC
Sbjct: 297 VMCLTFTSFRKAILS-FFCNFC 317


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/65 (23%), Positives = 24/65 (36%)
 Frame = +3

Query: 228 SRGQNLGK*CCRMASLKEMSVKHIRKKWGYTYDMYRIAKRNKNKVWKYYKIFDKNFSTSK 407
           S     G  CC +     M   + R K    +D Y I   +K   W   ++F  +     
Sbjct: 421 SNDTRTGSKCCNLRLFNAMKDGYDRHKASPNFDRYNIRNISKAIQWSVEEVFQHSAEVFV 480

Query: 408 TLDKY 422
           +LD +
Sbjct: 481 SLDDF 485


>Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical
           protein T22G5.4 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 527 CFFYGTPHSMEIQFQSFCF 471
           CF Y  P+S+ I FQS+ F
Sbjct: 74  CFLYNIPYSLAIMFQSWLF 92


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
            protein.
          Length = 1116

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 532  LXAFSMVRHIVWKSNFN-PFVSLIHXTSFKRHSSLHESYLS 413
            L + S+V   +   NF  P ++ ++ TSFKRH    ES LS
Sbjct: 1013 LSSVSVVSSSLLLKNFRKPTIANLYTTSFKRHQKFLESALS 1053


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,072
Number of Sequences: 27780
Number of extensions: 249297
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)