Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M02
         (927 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355338-1|CAH70366.2|  663|Homo sapiens Zic family member 5 (od...    33   1.5  
AF378304-1|AAK55418.1|  639|Homo sapiens zinc family member 5 pr...    33   1.5  
AK096229-1|BAC04732.1|  454|Homo sapiens protein ( Homo sapiens ...    32   3.4  

>AL355338-1|CAH70366.2|  663|Homo sapiens Zic family member 5
           (odd-paired homolog, Drosophila) protein.
          Length = 663

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 745 PCXGISSSGCXVXSPPNPGPVLHETPPXQTPXPXXP 852
           PC G  SSG    +PP P P L  TP    P P  P
Sbjct: 137 PCGG-GSSGAQPSAPPPPAPPLPPTPSPPPPPPPPP 171


>AF378304-1|AAK55418.1|  639|Homo sapiens zinc family member 5
           protein protein.
          Length = 639

 Score = 33.1 bits (72), Expect = 1.5
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 745 PCXGISSSGCXVXSPPNPGPVLHETPPXQTPXPXXP 852
           PC G  SSG    +PP P P L  TP    P P  P
Sbjct: 113 PCGG-GSSGAQPSAPPPPAPPLPPTPSPPPPPPPPP 147


>AK096229-1|BAC04732.1|  454|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38910 fis, clone NT2NE2006813, weakly similar to
           CELL SURFACE GLYCOPROTEIN 1 PRECURSOR. ).
          Length = 454

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 778 VXSPPNPGPVLHETPPXQTPXPXXPFXXXXLSGLXGPXPGXXPXLFS 918
           V SPP+  P+L + P   +  P  P     LSG+  P P   P L S
Sbjct: 175 VPSPPSDVPLLSDVPSPPSDVPSLPSDVPSLSGVPSP-PSDVPSLLS 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,497,890
Number of Sequences: 237096
Number of extensions: 2616908
Number of successful extensions: 8003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7936
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)