Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_M01
         (898 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu...    52   2e-05
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc...    47   7e-04
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell...    43   0.009
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa...    38   0.46 
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo...    37   0.61 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    36   1.1  
UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;...    34   5.7  

>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
           organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
           (Human)
          Length = 151

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 27/54 (50%), Positives = 30/54 (55%)
 Frame = +1

Query: 46  ILEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 207
           + ++CK LGITALHIKLRA            AQ          MKIGRIEDVTP
Sbjct: 81  VAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP 134


>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
           Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
           Ostreococcus tauri
          Length = 243

 Score = 46.8 bits (106), Expect = 7e-04
 Identities = 24/54 (44%), Positives = 28/54 (51%)
 Frame = +1

Query: 46  ILEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 207
           +  +CK LGITALHIK+RA             Q          +KIGRIEDVTP
Sbjct: 128 VAARCKELGITALHIKMRAKGGNKTKSPGPGGQSALRALSRSGIKIGRIEDVTP 181


>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
           natans|Rep: Ribosomal protein S14 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 145

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 23/55 (41%), Positives = 25/55 (45%)
 Frame = +1

Query: 43  KILEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 207
           K+   CK LGI ALHIK+RA            A            KIGRIED TP
Sbjct: 64  KVSNVCKVLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTP 118


>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
           Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
           jannaschii
          Length = 129

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = +1

Query: 43  KILEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 207
           K+ E  K  GI  +HIK+RA            AQ          ++IGRIEDVTP
Sbjct: 61  KLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTP 115


>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
           Thermoprotei|Rep: 30S ribosomal protein S11P -
           Cenarchaeum symbiosum
          Length = 198

 Score = 37.1 bits (82), Expect = 0.61
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 43  KILEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 207
           K++E  +  G T  HI++RA            AQ           +IGRI+DVTP
Sbjct: 127 KVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTP 181


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 407 DPDMIRYIDEXGQXTXKMQ 463
           DPDMIRYIDE GQ T +MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;
           Plasmodium knowlesi|Rep: 205 kDa Pk1(B+)1+ SICAvar
           antigen - Plasmodium knowlesi
          Length = 1759

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 75  NGLAHKAPCYWWKQNKDPWSWCSVCTSGS 161
           NG  H  PC+W K +K  W  C + TSGS
Sbjct: 223 NGKEHCVPCHWDKDDK--WKDCKITTSGS 249


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,600,279
Number of Sequences: 1657284
Number of extensions: 5697691
Number of successful extensions: 10646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10641
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)