Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L24
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           35   0.075
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    30   2.1  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
01_03_0308 - 14883728-14884120                                         29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.1 bits (77), Expect = 0.075
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 727 RXRHASRREXGGQVSGKRQGRNRRAQRGSFPGXTPG 620
           R R   RR  GG+V+G+   R+RR +RG++ G   G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 2/120 (1%)
 Frame = +2

Query: 356 PLPRSLT-RCARSFGC-GERYQLTQRR*YGYPQNQGITXERTCEQKASKRPGTVKRPRCW 529
           P P++   R    FGC     +  +R    Y + QG   E        + P TVK+ +  
Sbjct: 109 PSPKTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQGGDDEWRGSSFTRREPSTVKKSKTE 168

Query: 530 RFSIXSAPLTSITKIDAQVRXGETRQDYKDTRRXPWEAPSLRSPVPTLPLTGYLSAXLPS 709
           R S  S   +   KID          DYK      W     RSP  T+ L  +L A  P+
Sbjct: 169 RSSRRSHERSRRGKIDLDAAEATVTLDYK-IFVATWNVGG-RSPPNTMSLEDWLHAAPPA 226


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 356 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGIT--XERTCEQKASKRPGTV 511
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 603 DRTIKIPGVSPGKLPRCALLFRP---CRLPDTCPPXSLREAWR 722
           +R  +I G   G+ P  A L+R    C    +CPP    E WR
Sbjct: 65  ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 305 NESAN---ARGEAVCVLGALPLPRSLTRCAR 388
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,233
Number of Sequences: 37544
Number of extensions: 387683
Number of successful extensions: 1018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)