Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L23
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.008
03_02_0484 + 8805053-8805538 38 0.011
03_02_0483 - 8804021-8804485 38 0.011
03_02_0478 + 8775892-8776377 37 0.026
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.034
01_01_0229 - 1943473-1943922 36 0.045
01_01_0231 + 1951047-1951499 36 0.059
01_01_0227 + 1933247-1933699 35 0.10
02_02_0077 - 6586638-6587165 34 0.14
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 29 5.1
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 6.8
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Frame = +1
Query: 388 RKEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E +++ +
Sbjct: 74 KEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASM 133
Query: 544 SSDGVLSVIAPRKVP 588
+GVL+V P++ P
Sbjct: 134 -ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 37.9 bits (84), Expect = 0.011
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Frame = +1
Query: 388 RKEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E +++ +
Sbjct: 76 KEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM 135
Query: 544 SSDGVLSVIAPRKVP 588
+GVL+V P++ P
Sbjct: 136 -ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.9 bits (84), Expect = 0.011
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Frame = +1
Query: 388 RKEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E +++ +
Sbjct: 69 KEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM 128
Query: 544 SSDGVLSVIAPRKVP 588
+GVL+V P++ P
Sbjct: 129 -ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 36.7 bits (81), Expect = 0.026
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = +1
Query: 388 RKEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E +++ +
Sbjct: 76 KEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASM 135
Query: 544 SSDGVLSVIAPRK 582
+GVL+V P++
Sbjct: 136 -ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 36.3 bits (80), Expect = 0.034
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +1
Query: 388 RKEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE + V++ L
Sbjct: 65 KEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGL 124
Query: 544 SSDGVLSVIAPR 579
+GVL+V P+
Sbjct: 125 -ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.9 bits (79), Expect = 0.045
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +1
Query: 388 RKEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE + V++ +
Sbjct: 64 KEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASM 123
Query: 544 SSDGVLSVIAPR 579
+GVL+V P+
Sbjct: 124 -ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 35.5 bits (78), Expect = 0.059
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +1
Query: 388 RKEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAESVESRL 543
++E+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE + V++ +
Sbjct: 65 KEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGM 124
Query: 544 SSDGVLSVIAPR 579
+GVL+V P+
Sbjct: 125 -ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 430 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 582
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>02_02_0077 - 6586638-6587165
Length = 175
Score = 34.3 bits (75), Expect = 0.14
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 481 QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPIAQTG 633
+F RR+ LPE + V + DGVL+V +K PP + R + + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 197 LMDQHFGLGLTPEDFLSAAAGPLAEQRILPPVASP 301
L QH G+ P FL A GP + P A+P
Sbjct: 512 LQPQHAGIAQAPNPFLDAGFGPFPASNGMHPQANP 546
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 392 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 487
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,035,493
Number of Sequences: 37544
Number of extensions: 488290
Number of successful extensions: 1393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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