Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L20
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    29   7.1  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   7.1  
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224...    28   9.3  

>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 725 GXKGGTGXPVNXQGSGTGGAXXGXXQGG 642
           G +GG G P + +G G GG   G   GG
Sbjct: 854 GRRGGGGGPNSQRGRGRGGGGAGRGGGG 881


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 731 PEGXKGGTGXPVNXQGSGTGGAXXGXXQGG 642
           P G  GG G P    G G GG   G   GG
Sbjct: 172 PPGGGGGGGGPGRAPGGGGGGGGPGRAPGG 201


>01_07_0239 +
           42222024-42222133,42222220-42222301,42222396-42222486,
           42222702-42222814,42222912-42222984,42223080-42223178,
           42223201-42223406,42223693-42223832,42223912-42223969,
           42224067-42224137,42224207-42224741
          Length = 525

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 734 FPEGXKGGTGXPVNXQGSGTGGAXXGXXQGG 642
           +P G  GG G P    GSG G       QGG
Sbjct: 467 YPGGGMGGAGGPRGGGGSGYGVGGPNYQQGG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,928
Number of Sequences: 37544
Number of extensions: 319820
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)