Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L17
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    48   1e-05
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    41   0.001
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510     31   0.94 
08_01_0876 - 8598664-8599374                                           29   6.6  
04_03_0760 + 19334338-19334690,19337321-19338008                       29   6.6  
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    28   8.7  

>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 53/118 (44%)
 Frame = +2

Query: 506 RGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQHKMLLTDVNLSV 685
           +GPLA T   FW MV+E     ++ML +    + +KC  Y P     + +      N+ +
Sbjct: 137 QGPLAKTFDDFWEMVYEYQCPVIVMLTQF---DSLKCDEYLPL---RKQREAYGKYNVKI 190

Query: 686 EQISEEECPNYSIRVLKLCDLESSESREVIQFHYTTWPDFGVPSSPHAFLEYLKKIRD 859
                +    +   V+  C+ ESS    V    Y  WPD GVP++  A  +  K +++
Sbjct: 191 TNAKRDSHQLWLRDVMVQCN-ESSRVHSVRHIEYPDWPDHGVPTNTDAVRQIRKWLQN 247



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
 Frame = +1

Query: 352 EAKRPHNKALNRYRDVNPYDHSRIVLQR------SENDYINANLVRMESADR--QYILTQ 507
           EA+   N+  NRY DV P+D +R+ L+R      S NDYINA+ +++   +R  ++I TQ
Sbjct: 78  EARNAANREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINASFIKVTEDNRVAKFISTQ 137

Query: 508 G 510
           G
Sbjct: 138 G 138


>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
 Frame = +1

Query: 355 AKRPHNKALNRYRDVNPYDHSRIVLQ------RSENDYINANLVRME---SADRQYILTQ 507
           A+ P N+  NRY DV P+D +R+ L+       S N+YINA+L+  +    +  ++I TQ
Sbjct: 86  AQNPANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIETDDQGQSHTKFISTQ 145

Query: 508 G 510
           G
Sbjct: 146 G 146



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 506 RGPLAFTVGHFWLMVWEQNSRAVLMLNKVIEKNEIKCHWYWPHGNGEQ 649
           +GPL  T G FW MV+E     ++M+ K    +  KC  Y P   GE+
Sbjct: 145 QGPLVKTFGDFWQMVYENQCPVIVMVTKF---DGAKCDRYLPTNEGEE 189


>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
          Length = 964

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 677 LSVEQISEEECPNYSIRVLKLCDL 748
           LS+  +SE+ CPN+S+ + KL DL
Sbjct: 671 LSLGAVSEDTCPNFSLELCKLMDL 694


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 574 DGAAVLLPDHQPKVAYGER--KRSPESG 497
           DGAA LLP+  PK   G R  +RSP  G
Sbjct: 161 DGAAPLLPETSPKSRRGRRGGRRSPRRG 188


>04_03_0760 + 19334338-19334690,19337321-19338008
          Length = 346

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 872 PKRQHRGSSSSIRGM--REEKTALRSRAKLCN 783
           P++Q++GSSSS RGM    E+ A     K CN
Sbjct: 71  PQQQNQGSSSSARGMAAAAEQIAYEDAWKACN 102


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 692 ISEEECPNYSIRVLKLCDLE 751
           +S++ CPN++  +LKL DL+
Sbjct: 667 VSDDSCPNFAAELLKLTDLK 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,662,650
Number of Sequences: 37544
Number of extensions: 488846
Number of successful extensions: 1524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)