Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L16
         (1161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.76 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.93 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   2.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.76
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 955 PPPPXPPPP 929
           PPPP PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 3.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 955 PPPPXPPPP 929
           P PP PPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 22.6 bits (46), Expect(2) = 3.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 952 PPPXPPPPXP 923
           PPP PPP  P
Sbjct: 238 PPPPPPPTLP 247



 Score = 21.8 bits (44), Expect(2) = 0.76
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 952 PPPXPPPPXP 923
           P P PPPP P
Sbjct: 234 PLPAPPPPPP 243


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 538 PXPPPXXXXXXGAGXPPXPP 479
           P PPP      GAG PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 973 GXXXXXPPPPXPPPP 929
           G     PPPP PPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 952 PPPXPPPP 929
           PPP PPPP
Sbjct: 761 PPPPPPPP 768



 Score = 23.0 bits (47), Expect(2) = 2.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 949 PPXPPPPXP 923
           PP PPPP P
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 955 PPPPXPPP 932
           PPPP PPP
Sbjct: 9   PPPPPPPP 16



 Score = 22.6 bits (46), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 952 PPPXPPPPXP 923
           PP  PPPP P
Sbjct: 20  PPSQPPPPPP 29


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 973 GXXXXXPPPPXPPPP 929
           G     PPPP PPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 955 PPPPXPPPP 929
           PPPP PPPP
Sbjct: 306 PPPPPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,811
Number of Sequences: 5004
Number of extensions: 20796
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)