Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L12
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    30   0.53 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.71 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   2.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   6.6  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +3

Query: 96  VYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEI 245
           V+     P+   ++K  +   + +++ + S+  + L  Y  PS+ASP ++
Sbjct: 559 VFVHPPSPQSLYVEKLEKLNIRSDEVSKPSKASKTLHGYALPSLASPYDV 608


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 10  PITVXHFYGNPLRFXAGCKCMTYRTLRRAFTKTEKSRNDSISKRLGAANASRRKLTGT 183
           P    +FYG  + F   CK     TL+R  ++     N +    +G AN  +R L G+
Sbjct: 41  PYHKPYFYGPSIDFPTTCKIKQVHTLQRHGSRNPTGGNAAFD-AVGIANFQQRLLNGS 97


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 120 ERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGRTGEIRHDSTTDWS 299
           ER  L  + R   +Q+  + +S+++  L A    +  +   +      G    DS  D S
Sbjct: 742 ERIPLDPSMRSPLQQQSSENESKSQSMLSANNLNAGVNDFGLGFSEGLGSAHLDSN-DSS 800

Query: 300 MVKGDNDLXRLAAGP 344
           MV+G ND   +   P
Sbjct: 801 MVQGKNDFAPVVDSP 815


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  RLQRRRKAGTIQSPKGLAPPTQAGEN*PGQQNRT 196
           ++Q+++KA   QSPK   PP    ++ P Q+  T
Sbjct: 309 QMQQQQKAQQQQSPKAQQPPAHLVQSAPVQRKTT 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,411
Number of Sequences: 5004
Number of extensions: 36626
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)