Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L12
(931 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 34 0.14
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 31 1.7
12_01_1078 - 11202284-11202343,11202941-11203000,11203036-112030... 30 2.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 30 2.3
02_03_0041 + 14275897-14276370 30 2.3
07_03_1311 + 25687434-25687884,25689313-25689566,25689632-256902... 29 4.0
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 29 5.3
10_08_0186 - 15582925-15584334 28 9.2
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 360 LHVVHEAQRQVXQGHCHLSPLTSQLLNRGVFLPYDLE 250
+H H+ Q+ Q H HLS + QLL G+ LP DL+
Sbjct: 408 IHSQHQQQQMHLQQHHHLSTVQQQLLQEGLPLPGDLK 444
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 114 KPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGR-TGEIRHDSTT 290
KPE N++KA R+ +K+EKI+ + ++ + P + P+ S G T ++ H +
Sbjct: 608 KPEAINIEKAIRQHKKEEKINGNQEGQR---SSVEPRLHDPLVASENGAPTKKLPHPDSK 664
Query: 291 DWSMV 305
S +
Sbjct: 665 YLSQI 669
>12_01_1078 -
11202284-11202343,11202941-11203000,11203036-11203050,
11203322-11204026
Length = 279
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 442 RSHSQFPPHHQSWRSFRSRGTAVA-SPGP-SCRP*GPAASLXRSLSPFTIDQSVVESWRI 269
+ H FPPHH S + S G A SP P RP A SL P + E +R+
Sbjct: 21 KPHLAFPPHHPS-PARGSIGVRCAHSPSPHPLRPSAATADEEVSLPPSLRVSRLAEEFRV 79
Query: 268 SP 263
SP
Sbjct: 80 SP 81
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 72 DIQNIEARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQE 200
+++ E R+ K+ EK + N ++ + +R+ E+ DR+ R E+E
Sbjct: 442 EVEAHEKRIRKELEKQDMLNRKREEQVRREMERNDRERRKEEE 484
>02_03_0041 + 14275897-14276370
Length = 157
Score = 30.3 bits (65), Expect = 2.3
Identities = 27/93 (29%), Positives = 42/93 (45%)
Frame = +3
Query: 108 GEKPERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGRTGEIRHDST 287
GE P R + AW K R +E + P V ++ + R +S
Sbjct: 61 GEIPARRMERPAWHGG-VPAKFGRRRGLAEEEDGVPVPGEV--VATTADAQETRQRRNSG 117
Query: 288 TDWSMVKGDNDLXRLAAGPHGRHEGPGEATAVP 386
++ + V G++ L ++AG +G H G GEATA P
Sbjct: 118 SN-ATVAGEDALPEVSAG-NGEHAGEGEATATP 148
>07_03_1311 +
25687434-25687884,25689313-25689566,25689632-25690252,
25690684-25690836
Length = 492
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 74 HTEH*GARLQRRRKAGTIQSPKGLAPPTQAGE 169
HTE ARL R R A + GL PP Q E
Sbjct: 26 HTEFNRARLLRSRGAAAVAGADGLPPPGQPAE 57
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 439 SHSQFPPHHQSW-RSFRSRGTAVASPGPSCRP*GPAASLXRSLSP 308
S + PP+HQS S++S A PG +P A RS P
Sbjct: 966 SRGRVPPYHQSGGNSYQSHSAPSAGPGRYAQPPPYAGGYGRSYQP 1010
>10_08_0186 - 15582925-15584334
Length = 469
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 457 SRSCSRSHSQFPPHHQSWRSFRSRGTAVASPGPSCRP*G 341
+R R ++ F PHH+ R F T+ GP RP G
Sbjct: 20 ARHHHRRNAPFAPHHRRRRRFAHLTTSAVILGPDGRPIG 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,870
Number of Sequences: 37544
Number of extensions: 355372
Number of successful extensions: 3242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3242
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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