Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L12
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    30   2.7  
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U28739-1|AAK68186.2|  339|Caenorhabditis elegans Hypothetical
           protein C17G10.3 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +3

Query: 117 PERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGRTGEIRHDSTTDW 296
           P+  +L KA R+++  +   RD ++ +       PSV    E SSR +   IR     ++
Sbjct: 46  PKPSDLSKAERKEKNNKTARRDVKSSRGNVKTMKPSVVKAEERSSRSKK-SIREGKLKNF 104

Query: 297 SMVKGDNDLXRL 332
           S+ K ++++  L
Sbjct: 105 SLPKDESEITAL 116


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 72  DIQNIEARVYKDGEKPERFNLQKAWRRQRKQEKIDRDSRTEQELEA 209
           DI+     + K G+K +R    K  R QR+QEK+ + +R  +E EA
Sbjct: 641 DIEKARQEI-KSGDKEDRKRF-KLLREQRRQEKLAKKNRRAEEEEA 684


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +3

Query: 117 PERFNLQKAWRRQRKQEKIDRDSRTEQELEAYTAPSVASPVEISSRGRTGEIRHDSTTDW 296
           P+  +L KA R+++  +   RD ++ +       PSV    E SSR +   IR     ++
Sbjct: 38  PKPSDLSKAERKEKNNKTARRDVKSSRGNVKTMKPSVVKVEERSSRSKK-SIREGKLKNF 96

Query: 297 SMVKGDNDLXRL 332
           S+ K + ++  L
Sbjct: 97  SLPKDEPEITAL 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,208
Number of Sequences: 27780
Number of extensions: 241560
Number of successful extensions: 1545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)