Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L11
         (1164 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.42 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.96 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.42
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 713  PPPPPPPP 736
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.42
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 715  PPPPPPPP 738
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.42
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 755  PPPPPPPP 778
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 718  PPPPPPPXXXG 750
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 613  PXPPPPPXXGG 581
            P PPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.96
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 749  GXPPPPPPPP 778
            G P PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 713  PPPPPPPP 736
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 715  PPPPPPPP 738
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 715 PPPPPPPPXXXG 750
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 712 PPPPPPPPPXXXGXXP 759
           PP P PPPP      P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 755 PPPPPPPP 778
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect = 9.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 613 PXPPPPPXXGGG 578
           P PPPPP    G
Sbjct: 341 PAPPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 613 PXPPPPPXXGG 581
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384



 Score = 23.4 bits (48), Expect = 3.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 772 GGGGGGXXXXXXGGGGGGG 716
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 3.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 769 GGGGGXXXXXXGGGGGGGG 713
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 768 GGGGGXPXXXXGGGGGGGG 712
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,703
Number of Sequences: 438
Number of extensions: 11771
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39524328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)