Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L10
         (984 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445209-3|CAI15184.1|  419|Homo sapiens POU domain, class 4, tr...    33   2.1  
U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.      32   2.8  
L20433-1|AAA65605.1|  420|Homo sapiens octamer binding transcrip...    32   2.8  

>AL445209-3|CAI15184.1|  419|Homo sapiens POU domain, class 4,
           transcription factor 1 protein.
          Length = 419

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 806 GGXPRGGXXXGGNPXGXXXRSPGGGFXXP 720
           GG P GG   GG P G     PGGG   P
Sbjct: 150 GGGPGGGGGPGGGPGGGGGGGPGGGGGGP 178


>U10063-1|AAA57161.1|  423|Homo sapiens POU domain factor protein.
          Length = 423

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 821 GXGKXGGXPRGGXXXGGNPXGXXXRSPGGGFXXP 720
           G G  GG   GG   GG P G     PGGG   P
Sbjct: 149 GPGGGGGPGGGGGPGGGGPGGGGGGGPGGGGGGP 182


>L20433-1|AAA65605.1|  420|Homo sapiens octamer binding
           transcription factor 1 protein.
          Length = 420

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 821 GXGKXGGXPRGGXXXGGNPXGXXXRSPGGGFXXP 720
           G G  GG   GG   GG P G     PGGG   P
Sbjct: 146 GPGGGGGPGGGGGPGGGGPGGGGGGGPGGGGGGP 179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,810,820
Number of Sequences: 237096
Number of extensions: 2064973
Number of successful extensions: 4496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4333
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13158340014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)