Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L10
         (984 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   0.95 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   0.95 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   0.95 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 27/100 (27%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
 Frame = +1

Query: 655 PXXAPPPPXKNXPKXFYPLXXXGXXXPPP--GDLXXXPXGFPPXKXXXXXXXXXXXXXXX 828
           P  +PPPP    PK   PL   G   PPP  G       G PP                 
Sbjct: 233 PAGSPPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 290

Query: 829 XXRETXFPPFXPXGGXLGAXXXXXXXXGGXPXPGXXXXXP 948
             R    PP  P  G            GG P P      P
Sbjct: 291 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 27/100 (27%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
 Frame = +1

Query: 655 PXXAPPPPXKNXPKXFYPLXXXGXXXPPP--GDLXXXPXGFPPXKXXXXXXXXXXXXXXX 828
           P  +PPPP    PK   PL   G   PPP  G       G PP                 
Sbjct: 254 PAGSPPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 311

Query: 829 XXRETXFPPFXPXGGXLGAXXXXXXXXGGXPXPGXXXXXP 948
             R    PP  P  G            GG P P      P
Sbjct: 312 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 27/100 (27%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
 Frame = +1

Query: 655 PXXAPPPPXKNXPKXFYPLXXXGXXXPPP--GDLXXXPXGFPPXKXXXXXXXXXXXXXXX 828
           P  +PPPP    PK   PL   G   PPP  G       G PP                 
Sbjct: 239 PAGSPPPPPP--PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 296

Query: 829 XXRETXFPPFXPXGGXLGAXXXXXXXXGGXPXPGXXXXXP 948
             R    PP  P  G            GG P P      P
Sbjct: 297 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 815 GKXGGXPRGGXXXGGNPXGXXXRSPGGGFXXP 720
           G  GG   GG   GG+  G    S GGG+  P
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAP 298


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 815 GKXGGXPRGGXXXGGNPXGXXXRSPGGGFXXP 720
           G  GG   GG   GG+  G    S GGG+  P
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAP 298


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 655 PXXAPPPPXKNXPKXFYPLXXXGXXXPPP 741
           P   PPPP +  P   YP        PPP
Sbjct: 644 PPKRPPPPHRQTPHELYPEEQPYVRRPPP 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,028
Number of Sequences: 27780
Number of extensions: 245477
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)