Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.7  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   8.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.2  

>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 173 DLFSTVNN*LISNVFPINHDLQTYLQKKANKIASNNPTI 57
           D+FS VNN L+S++   +  + +   KK +K+  +N T+
Sbjct: 269 DMFSNVNNQLLSHLVTSSISIVSKPSKKGSKLKISNITL 307


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 301 CSKHKTTLLPHYWKAVQDFRMQILY 227
           C     T  PH WKAV   R ++L+
Sbjct: 147 CPDCARTYTPHIWKAVCQVRQKVLH 171


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 130  KTLLIN*LLTVEKRSPQTKYIQYCQFKVIIY*DKVFA 240
            KT L+  + T E R     YI+ C     IY D +FA
Sbjct: 2290 KTALLLKMRTFEGRFDNKLYIEACDLLSTIYRDPIFA 2326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,213
Number of Sequences: 5004
Number of extensions: 57086
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)