Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L05
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.7  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   6.2  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.2  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   8.2  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
 Frame = -2

Query: 716 SSILRIPYKKWDTKTXTS--NIKSWYILHXANLLYDPIGLR*FCPIISAGSLQSFHGTAR 543
           SS +  PY    T + TS  +I S Y+      L    G   +     A    S  GT  
Sbjct: 169 SSNITTPYSNRITNSNTSVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTTS--GTVE 226

Query: 542 IVEIPSLGSVTVIPGVSVTLYLPSFMTNGHWSCTDDTVSVT 420
           +V IP+ G+VT        LY  +F  NG  S T + V  T
Sbjct: 227 VV-IPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPT 266


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 196 KVWSELQSPQVGAVNFFTGMGGF--LQTLIFGYAGIRIHLDRIEITRPQ-LPPETKEFKI 366
           K+WS+L   + G ++F     GF     L+F    ++  +    I  P+ +P    +  +
Sbjct: 234 KIWSKLSKVRHGRIDFVLDNAGFELFVDLLFATYLLKTEIAETIILHPKDVPWFVSDVLV 293

Query: 367 KGIKYLGSSLSMHIQATSVTLTVSSV 444
             I +L +SL+ +     V    S +
Sbjct: 294 NDIPHLFNSLTSYFSGEGVQKLASDL 319


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184  REPFKVWSELQSPQVGAVNFFTGMGGFLQTLIFG-YAGI 297
            ++ F + +E + P +G + F +GM G L T + G YAG+
Sbjct: 1007 QKEFVIGNE-EKPIIGGIEFSSGM-GLLHTALLGVYAGV 1043


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +1

Query: 208 ELQSPQVGAVNFFTGMGGFLQTLIFGYAGIRIHLDRIEITRPQLPP 345
           E+    V A+      GG + T+ F    +R HL       P  PP
Sbjct: 130 EVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSFRTPPRPP 175


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 585  YWAELSEAYWIIE*ISXVQNIPXLNIRCXSFCVP 686
            +W  LS  YWI++    +     LN RC  +  P
Sbjct: 2320 HWESLSNTYWIVQLNIFLSRCFDLNQRCQFYKKP 2353


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 775 SFRXLXQIXKPRKERSXSDYHPFYXFHTKNGTQKL 671
           SFR    + K  K+RS  +Y   Y  +T+   +KL
Sbjct: 317 SFRDQSAMKKREKQRSKDEYASLYKEYTRKEQEKL 351


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 84  SSYDLEYACYRILGRRRQSKGW 149
           SS+D++  C+ ++ RR  S  W
Sbjct: 795 SSFDIQQGCFNVIKRRLSSYKW 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,603
Number of Sequences: 5004
Number of extensions: 70014
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)