Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L04
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   1.5  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    28   1.5  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   4.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   4.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.0  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   8.0  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   8.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 475 SALSNS-HLRPNGRLRSSACIRGSTRVPVPSALNGASP 585
           SALS+S HL+P     SS+ +  S   P P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 566 ADGTGTRVLPRIHALLRSRPLGRRCEFDKADQSTVYNVVRRT 441
           ADG G  V+P    L+ + P   + +FD  D    +    RT
Sbjct: 14  ADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERT 55


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 DTNCPAYDIIHCALISFIKFASPSQW 509
           +TNC  Y +I+ A   + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 320 LLVYNVVLSPAGFFEDTSRFVALGNRFVTFFRY 222
           L V + +LSP G  ++TS F+ LGN  ++F  Y
Sbjct: 19  LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 261 KTRCIFKESGWAKNNVIDKKKVSDYFE 341
           KT  IFK++G+A  NV+D    S  F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 273 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 362
           IF+E G   +N+ D     DY    + DNP
Sbjct: 13  IFEEKGSTSSNISDNCASRDYDVNISSDNP 42


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 72  ALKMLTILFLLPIVVGVLSGNIPEQPRVYCGELPNTIFPCL 194
           A++ L  ++ L IVV +L G IPE+       L  T+ P L
Sbjct: 284 AVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYL 324


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 378 VQNFKTTCXSDSLKPQGVDTNCPAYDIIHCALISFIKFASP 500
           V NF      DS+ P  +   CP Y I H    S   + SP
Sbjct: 272 VLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,112
Number of Sequences: 5004
Number of extensions: 61886
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)