Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L04
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.39
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 32 0.52
12_02_0207 - 15542329-15542970 29 4.8
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 4.8
03_02_0744 + 10880496-10880891 29 4.8
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 6.4
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 6.4
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 29 6.4
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 601 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 473
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 273 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCXSDSLKPQGVDTNCP-- 446
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 447 -AYDIIHCA 470
YD + CA
Sbjct: 981 ILYDAMDCA 989
>12_02_0207 - 15542329-15542970
Length = 213
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 211 IILGLPR--HGNIVFGNSPQ*TRGCSGMLPLNTPTTMGNKNKIVSILSAQRSSKS 53
++ G+P+ HG ++ G P G G + + PT N++V ++ + ++S
Sbjct: 101 VLAGIPKNGHGGVIAGRPPPSLGGGGGAVVVRAPTVRVKVNRLVVLVPSALRARS 155
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 201 PKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAV 380
PKI QP + +KP++ T K G ++ D+K ++ +F+K + SA++
Sbjct: 179 PKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLA---ARFSKVTGNASASI 235
Query: 381 QNFKTTCXSDSLK 419
+ K S S+K
Sbjct: 236 SSSKDKVLSASIK 248
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 252 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 365
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 525 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 614
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 480 FIKFASPSQWSTSEQCVYPRQYAGACPV 563
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 72 ALKMLTILFLLPIVVGVLSGNIPEQPRVYCGELPNTIFPC-LGNPKIIQPEVSEKCN 239
ALK L L I L G IP + G+L +T C +GNPK+ P +S +C+
Sbjct: 514 ALKNLNFLTRFNISYNDLEGPIPTE-----GQL-STFTDCFIGNPKLCGPMLSHRCS 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,747
Number of Sequences: 37544
Number of extensions: 426079
Number of successful extensions: 1271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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