Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L03
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 294 9e-81
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 128 8e-31
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 113 2e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 107 3e-24
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 104 2e-23
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 103 3e-23
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 103 3e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 98 1e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 2e-21
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 83 4e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 83 5e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 83 7e-17
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 78 1e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 78 1e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 76 6e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 76 6e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 76 8e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 66 5e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 3e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 2e-05
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.7
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 294 bits (722), Expect = 9e-81
Identities = 140/217 (64%), Positives = 165/217 (76%), Gaps = 2/217 (0%)
Frame = +1
Query: 190 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 369
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 370 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 549
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 550 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 723
+VF+GG+ I++D E K+ PHIVV TPGR+ A F+LDECDK+LE
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
Query: 724 SLDMRRDVQEIFRNPPHGKQVMMFSAXLSKEIRPVCK 834
S+DMRRD+QE+FR P KQVMMFSA LS EIRP+CK
Sbjct: 212 SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICK 248
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 128 bits (310), Expect = 8e-31
Identities = 69/183 (37%), Positives = 108/183 (59%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 433 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 612
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 613 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGKQVMM 792
HIVVGTPGR+L F++DE DK+L S + ++++ P +Q+ +
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL-SPEFTPIIEQLLSYFPKNRQISL 222
Query: 793 FSA 801
+SA
Sbjct: 223 YSA 225
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 113 bits (273), Expect = 2e-26
Identities = 70/192 (36%), Positives = 100/192 (52%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 433 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 612
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 613 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGKQVMM 792
H+VVGTPGR+ F+LDE D+ML S + + +IF+ P QV++
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML-SRGFKDQIYDIFQLLPPTAQVVL 197
Query: 793 FSAXLSKEIRPV 828
SA + +++ V
Sbjct: 198 LSATMPQDVLEV 209
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 107 bits (256), Expect = 3e-24
Identities = 65/191 (34%), Positives = 95/191 (49%)
Frame = +1
Query: 247 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 426
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 427 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 606
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 607 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGKQV 786
H+V GTPGR+ ILDE D++L + + +I+R P G QV
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ-GFKEQIYDIYRYLPPGTQV 197
Query: 787 MMFSAXLSKEI 819
++ SA L +++
Sbjct: 198 VVVSATLPQDV 208
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 104 bits (249), Expect = 2e-23
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 429
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 430 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 594
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 595 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPH 774
L P IV+ TP R + ++DE D ML S D++ + R+ P
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML-SFGYNEDMKTLSRSLPR 194
Query: 775 GKQVMMFSAXLSKEIRPVCKNLCXTXWXL 861
G Q + SA LSK I + K +C + L
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFIL 223
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 103 bits (247), Expect = 3e-23
Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Frame = +1
Query: 220 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 399
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 400 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 570
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 571 PIQKDEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDV 747
++ E+ L+ P IV+ TPGR + ++DE D+MLE ++
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED-GFADEL 426
Query: 748 QEIFRNPPHGKQVMMFSAXLSKEI 819
EI + P +Q M+FSA ++ ++
Sbjct: 427 NEIIQACPKSRQTMLFSATMTDKV 450
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 103 bits (247), Expect = 3e-23
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 433 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 612
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 613 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNPPHGKQVM 789
H++V TPGR++ + I+DE D++L+ +D + +I + PH ++ +
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTL 224
Query: 790 MFSAXLSKEI 819
+FSA ++ ++
Sbjct: 225 LFSATMTSKV 234
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 98.3 bits (234), Expect = 1e-21
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 7/199 (3%)
Frame = +1
Query: 247 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 426
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 427 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 600
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 601 TACPHIVVGTPGRI--LAXXXXXXXXXXXXXXFILDECDKMLES--LDMRRDVQEIFRNP 768
PH+VV TPGR+ + +LDE D++L+ + + EI NP
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 769 PH-GKQVMMFSAXLSKEIR 822
H +Q +FSA + ++
Sbjct: 300 MHTQRQTFIFSATFDEGLQ 318
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 97.5 bits (232), Expect = 2e-21
Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 2/205 (0%)
Frame = +1
Query: 211 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 390
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 391 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 564
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 565 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 744
G+ +++ +L + P IVV TPGR L + DE D++ E +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFE-MGFAAQ 233
Query: 745 VQEIFRNPPHGKQVMMFSAXLSKEI 819
+ EI P +Q ++FSA L + +
Sbjct: 234 LTEILHALPTSRQTLLFSATLPRTL 258
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 83.4 bits (197), Expect = 4e-17
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 2/191 (1%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 426
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 427 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 606
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 607 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGKQV 786
IV+GTPG ++ F+LDE D ML+ + I P Q+
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 787 MMFSAXLSKEI 819
++FSA S+ +
Sbjct: 290 VLFSATFSERV 300
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 83.0 bits (196), Expect = 5e-17
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
Frame = +1
Query: 268 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 447
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 448 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 612
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 613 HIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGKQ 783
IVV TPGR +L+ +LDE D+M + L V I N +Q
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD-LGFEPQVMRIINNIRPDRQ 601
Query: 784 VMMFSAXLSKEIRPVCKNL 840
++FSA + + + + +
Sbjct: 602 TVLFSATFPRAMEALARKV 620
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 82.6 bits (195), Expect = 7e-17
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 8/223 (3%)
Frame = +1
Query: 193 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 366
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 367 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 528
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 529 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 708
S +R + +GG+P L I + TPGR+L +LDE
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDEA 278
Query: 709 DKMLESLDMRRDVQEIFRNPPHGKQVMMFSAXLSKEIRPVCKN 837
D+ML+ + +++I +Q +MFSA KE++ + ++
Sbjct: 279 DRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARD 320
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 78.2 bits (184), Expect = 1e-15
Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 433 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 600
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 601 TACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR-NPPH 774
+++V TPGR+L ++DE D++LE + ++++I + P
Sbjct: 210 KGV-NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE-IGFEDEMRQIMKILPSE 267
Query: 775 GKQVMMFSAXLSKEIRPVCK 834
+Q ++FSA + ++ + +
Sbjct: 268 NRQTLLFSATQTTKVEDLAR 287
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 78.2 bits (184), Expect = 1e-15
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 6/196 (3%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 433 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 612
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 613 HIVVGTPGR----ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPP--H 774
H+VV TPGR I + ++DE D++L S D+ + F P
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFADDLDDCFSVLPASE 185
Query: 775 GKQVMMFSAXLSKEIR 822
+Q ++F+A ++ IR
Sbjct: 186 DRQTLLFTATVTDAIR 201
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 76.2 bits (179), Expect = 6e-15
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Frame = +1
Query: 268 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 429
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 430 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 603
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 604 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPP 771
HIVV TPGR+L ++DE D+ML+ + DV +I + P
Sbjct: 375 GA-HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLP 428
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 76.2 bits (179), Expect = 6e-15
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 433 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 600
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 601 TACPHIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHG 777
+I+V TPGR+L ILDE D++L+ + R + I + P
Sbjct: 160 RM--NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVH 216
Query: 778 KQVMMFSAXLSKEIRPVCK 834
+Q M+FSA +K ++ + +
Sbjct: 217 RQTMLFSATQTKSVKDLAR 235
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 75.8 bits (178), Expect = 8e-15
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Frame = +1
Query: 307 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 477
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 478 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAX 651
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 652 XXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPH-----GKQVMMFSAXLSKE 816
+LDE D+ML++ +D++ I + P +Q + FSA +
Sbjct: 300 INDGSIDCSQVGYLVLDEADRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358
Query: 817 IR 822
+R
Sbjct: 359 VR 360
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.5 bits (155), Expect = 5e-12
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Frame = +1
Query: 304 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 465
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 466 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 645
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 646 -AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNPPHGK-QVMMFSAXLSKEI 819
FILDE D++++ + + I K + + FSA + ++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 820 RPVCKNLCXTXWXL 861
V + + T + L
Sbjct: 235 SNVFRGILGTDFKL 248
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.5 bits (140), Expect = 3e-10
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 11/205 (5%)
Frame = +1
Query: 253 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 432
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 433 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 579
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 580 KDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIF 759
D + P +V+GTPGR+ ILDE D +++ + +R +Q I
Sbjct: 123 NDLASFREKNPSVVIGTPGRL--NEMLSHISSKHLEILILDEADTLID-MGFQRTLQSII 179
Query: 760 RNPPHGKQVMMFSAXLSKEIRPVCK 834
P ++ +FSA ++ + K
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLK 204
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.4 bits (100), Expect = 2e-05
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Frame = +1
Query: 325 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 501
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 502 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXX 681
++ E+ S S + + IQ+ L+ + +GTP R L
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMR-LVQAIQTGLSFEK 189
Query: 682 XXXFILDECDKMLE 723
F++DE D++ E
Sbjct: 190 VEFFVMDEADRLFE 203
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 501
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,137
Number of Sequences: 5004
Number of extensions: 69159
Number of successful extensions: 200
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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