Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L02
         (1230 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.88 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 1058 PAPPXPPPCXXXPXNXPTPGXPXXXXPPPXGXR 1156
            PAPP        P + PTP  P      P   R
Sbjct: 45   PAPPEEEAASPTPGDVPTPSSPRSISEDPLNCR 77


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 998  PRXXXPGIAAPXXGTPXXTXPAPPXPPPCXXXPXNXPT 1111
            P    PG A P  G      P  P  PP    P   PT
Sbjct: 155  PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,446
Number of Sequences: 336
Number of extensions: 2170
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35966350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)