Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_L01
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    28   1.5  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   3.6  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   8.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   8.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   8.2  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 393 SGISSLQDPHLLSKPLNALGVLTSKG-QKVPDAIGLEPKPGPVGGSSDEK 539
           SG   + DP LL + + ALGV    G Q+  DA  +   P   GG   E+
Sbjct: 505 SGAQRIHDPELLVERMKALGVSPDVGLQQYIDAFAIGCPPHAGGGIGLER 554


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 221 IQYIQRFVIQYGQWAAHGHFGKEPRSQWMQSKQT 120
           +Q  +RF +Q+G+ AA    G E R  W +  QT
Sbjct: 507 LQLRERFDLQFGRRAAAKILGLEDRVDWRKCVQT 540


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/79 (25%), Positives = 29/79 (36%)
 Frame = +3

Query: 249 PVSGALSTLGLRXGQSAXHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQDPHLL 428
           P S  + T G   G    + GL        G   +L L+     LG   G      P  L
Sbjct: 163 PASCIVITTGTFLG-GQINVGLTQLAAGRYGERPSLPLSKCLSNLGFKMGRLKTGTPPRL 221

Query: 429 SKPLNALGVLTSKGQKVPD 485
           S P+N   +    G ++P+
Sbjct: 222 SSPINISKMTEQTGDEIPE 240


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 225 VYSVYPAVCYSIRAMGCSWTF 163
           +Y   PA+ + I A+G SW+F
Sbjct: 637 LYHYLPALYFGIAALGVSWSF 657


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 191  YGQWAAHGHFGKEPRSQWMQSKQTATPDNHQQ 96
            Y +W  +G   KE +++W Q + +   + H++
Sbjct: 1251 YNEWKKYGKRFKEEQARWRQEELSNLHETHEK 1282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,113
Number of Sequences: 5004
Number of extensions: 59556
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)